Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1488 ATGGGGAGGAAGGGAAATTGGTTTTCTAGTGTGAAGAAAGCTCTCAGCCCTGACTCGAAGGAGAAGAAAGATCAGAAATCAAGTAAATCTAAGAAGAAATGGTTTGGGAAGCAAAAATTTGAGACTTCAGTCTCATACTCAGAAGCTGATAAAGCACCACCACCACCACCTCCTATTCCTCCACCAGAAGAGATTAAATTAACTGATATTGAACATGAAATCAGTCATGATCACGATCAAGTTGTTGAAGTTGCAACTGCCATGGATGCTGAGGAACTTGTTCCTTCTGTTCAAATAGAACCTGTTAGGGTTGAAGCTGCCCTAATTGCTCATTTTGCCGGTAAACCAAAGGATGAAGTGGCAGCTATCAAAATTCAAACAGCTTTTCGTGGATACTTGGCAAGAAGAGCATTGCGGGCTTTAAGGGGGCTGGTCAGGTTGAAATTATTGATGGAAGGGCCGGTTGTTAAACGCCAAGCCACAAGTACCCTCCGCTCTATGCAGACATTATCTCGCTTGCAGTCTCAGATTCGTTCCAGGAGGATCAGAATGTTAGAGGAGAATCAGGCTCTGCAGAGGCAGCTCTTACAGAAACATGCTAGAGAGCTTGAGAGCTTGCGGATGGGAGAAGAATGGGATGACAGCCTACAATCAAAAGAACAAATCGAAGCCAAGTTACTAAGCAAGTATGAGGCTACTATGAGAAGAGAAAGAGCACTGGCTTATGCATTCACTCATCAGCAAAACTGGAAGAACTCGTCTAGATCTGTAAATCCAATGTTTATGGATCCAACTAATCCGAGCTGGGGTTGGAGCTGGTTGGAACGATGGATGGCAGCCCGACCTTGGGAGAGCCGTAGCCATATGGATAAAGAGTTGAATGACCACTCCTCCATAAGAAGCTCAAGCCGCAGCATTACCGGTGGAGAAATCAGCAAGTCATTTGCTCGTTTCCAGCTCAATTCGGAAAAGCACTCTCCAACAGCCAGCCAGAATCCTGGCTCCCCTAGCTTTCAGTCCACTCCTTCCAAGCCAGCTTCATCATCTGCTAAGAAACCAAAGAAGGTAAGTCCAAGCCCAAGGGGCAGCTGGGTTATGGACGAGGACTCCAAAAGCTTGGTCAGTGTACACTCTGACCGGTTCCGGAGGCACTCCATTGCCGGTTCATCGGTGAGAGATGACGAGAGCCTTGCTAGCTCTCCAGCAGTTCCAAGCTACATGGTGCCAACTCAATCTGCAAAAGCCAAGTCCAGGACACAAAGTCCATTAGCCTCAGAAAATGCAAAAGCAGAGAAAGGTTCCTTTGGGAGTGCAAAGAAGCGGCTTTCTTTCCCAGCTTCACCTGCCAGGCCAAGGCGCCATTCAGGTCCACCAAAGGTTGAAAGCAGCAGCTTAAATGCAGAGTTAGCTGTGGACAAGGGTGTGGACAGTTGA 1434 0.4728 MGRKGNWFSSVKKALSPDSKEKKDQKSSKSKKKWFGKQKFETSVSYSEADKAPPPPPPIPPPEEIKLTDIEHEISHDHDQVVEVATAMDAEELVPSVQIEPVRVEAALIAHFAGKPKDEVAAIKIQTAFRGYLARRALRALRGLVRLKLLMEGPVVKRQATSTLRSMQTLSRLQSQIRSRRIRMLEENQALQRQLLQKHARELESLRMGEEWDDSLQSKEQIEAKLLSKYEATMRRERALAYAFTHQQNWKNSSRSVNPMFMDPTNPSWGWSWLERWMAARPWESRSHMDKELNDHSSIRSSSRSITGGEISKSFARFQLNSEKHSPTASQNPGSPSFQSTPSKPASSSAKKPKKVSPSPRGSWVMDEDSKSLVSVHSDRFRRHSIAGSSVRDDESLASSPAVPSYMVPTQSAKAKSRTQSPLASENAKAEKGSFGSAKKRLSFPASPARPRRHSGPPKVESSSLNAELAVDKGVDS* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1488 477 ProSiteProfiles IQ motif profile. 118 146 IPR000048 GO:0005515
Gso19g1488 477 Pfam IQ calmodulin-binding motif 121 139 IPR000048 GO:0005515
Gso19g1488 477 MobiDBLite consensus disorder prediction 403 427 - -
Gso19g1488 477 PANTHER IQ-DOMAIN 5-RELATED 1 472 - -
Gso19g1488 477 SMART iq_5 117 139 IPR000048 GO:0005515
Gso19g1488 477 MobiDBLite consensus disorder prediction 387 477 - -
Gso19g1488 477 Gene3D - 102 146 - -
Gso19g1488 477 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 1 472 - -
Gso19g1488 477 MobiDBLite consensus disorder prediction 322 354 - -
Gso19g1488 477 MobiDBLite consensus disorder prediction 322 370 - -
Gso19g1488 477 MobiDBLite consensus disorder prediction 1 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1488 Gso-Chr19 43724944 43729383 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1488 1 465 IQD Protein Family AT5G03040 54.507 8.34e-153 441
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1488 - - gmx:100800080 826.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1488 19 43724944 43729383 Gso3g1502 3 40924998 40929168 GST
Gso19g1488 19 43724944 43729383 Gso10g0435 10 4624828 4628567 PCT
Gso10g0435 10 4624828 4628567 Gso19g1488 19 43724944 43729383 PCT