Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1481 ATGGCGTTGCGGCGTCTCCGGCGGAACCTTGCCTTGTCGATACCACGTCGGCAATCGCCCGAAGGTGACCTTTTCAATGGAGCTTCTACCAAACAAACTCACGCCGCGATGTTGGATCTCAACCTCAACGCCGATTCCGCCTCCGACTTGCAAATGGAGAGCTCCGGCAGCTTCAATTCCTCCGTCGTCAATGCCGCCGACACCGACGACTCCTGCTCCTACGGCGACGCCGTTGCCTACAACTTTGCCATCCTCAACAACGCCGCCACCTCCGACGGGCTTCCCCTCGGCGCCGCCGGAGAACCGTCCGTTCGCACCATCCAGCTCTTTCCGGCGGCCGATTCGGGAGCCTCGGCGGCGGCGTGGCTTGATTTCTCGTCGAAGGTGGATCAGCACGGTGCTCCGCCGGAGCAGAGGATCACTCCCCGGCAACAGCAGGTGAAGAAGAGCCGAAGAGGACCGCGGTCGCGAAGCTCGCAGTATCGCGGCGTTACTTTCTATCGCAGAACCGGAAGATGGGAATCGCACATTTGGGACTGTGGGAAACAAGTGTACTTGGGTGGATTTGACACCGCGCATGTTGCGGCAAGGGCTTATGATCGAGCTGCGATCAAGTTCCGTGGCGTTGATGCGGATATCAATTTTAACGTTAGCGATTACGATGAAGATATAAAGCAGATGAGTAACTTCACGAAGGAGGAGTTTGTGCACATTTTGCGGCGACAGAGCACTGGTTTTTCGAGGGGAAGCTCCAAATACAGGGGAGTTACTCTGCATAAGTGCGGGCGATGGGAAGCTCGTATGGGGCAGTTTCTTGGTAAAAAGTATATATATCTTGGGCTATTCGACAGTGAATTAGAGGCTGCAAGAGCGTATGATAAGGCAGCTATAAAATGCAATGGAAGGGAAGCAGTTACAAACTTCGAGCCCAGCTTGTATGAAGGGGAGGTAATTTCCCAGTCTGATAATGAAGATACCAAGCAAAGTCTTGATCTGAACTTGGGCATAGCTCCCCCTTCTTACTCTGATGGTCAAATCAAGAACACACCCAGCAACGGGAGTGGTATGATAGCTCCGCAGAGCTGGGATGATATCCCTCTCGATAAGCGAGTTATGTTTGAGCACTCTGGATCAAGATCACGGACCATTCAGCCACCTCATCATGGCTTCTCCATAGCATCTGGGCAACATCCTTCCGTCTGGAATGGTAGCAATTTCTTTCCTATCTACGAGGAAACAGCAATAGAGAAGAGGATGGAAGCTGCTCCCGTGCCAAATTGGGCATGGCAAGTCCAAGGTCCTTATGGCAGGGCAACTCTTGCTCCACCCTTCTCTACTGCAGCATCATCAGGATTCCCTTCAACAATAATACCATCAGCTGCGGATACTCAAATTCGTTTTCCAAACATGACATTCCTCCACTCGCATTTTCCATCATCAATCACTAACTCCGGCACCATATCCCCTTTCTTCTTCGGTAGCTGA 1485 0.5226 MALRRLRRNLALSIPRRQSPEGDLFNGASTKQTHAAMLDLNLNADSASDLQMESSGSFNSSVVNAADTDDSCSYGDAVAYNFAILNNAATSDGLPLGAAGEPSVRTIQLFPAADSGASAAAWLDFSSKVDQHGAPPEQRITPRQQQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHVAARAYDRAAIKFRGVDADINFNVSDYDEDIKQMSNFTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSELEAARAYDKAAIKCNGREAVTNFEPSLYEGEVISQSDNEDTKQSLDLNLGIAPPSYSDGQIKNTPSNGSGMIAPQSWDDIPLDKRVMFEHSGSRSRTIQPPHHGFSIASGQHPSVWNGSNFFPIYEETAIEKRMEAAPVPNWAWQVQGPYGRATLAPPFSTAASSGFPSTIIPSAADTQIRFPNMTFLHSHFPSSITNSGTISPFFFGS* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1481 494 PRINTS Ethylene responsive element binding protein signature 253 264 IPR001471 GO:0003700|GO:0006355
Gso19g1481 494 PRINTS Ethylene responsive element binding protein signature 291 311 IPR001471 GO:0003700|GO:0006355
Gso19g1481 494 ProSiteProfiles AP2/ERF domain profile. 160 216 IPR001471 GO:0003700|GO:0006355
Gso19g1481 494 ProSiteProfiles AP2/ERF domain profile. 252 309 IPR001471 GO:0003700|GO:0006355
Gso19g1481 494 CDD AP2 251 311 IPR001471 GO:0003700|GO:0006355
Gso19g1481 494 SUPERFAMILY DNA-binding domain 159 218 IPR016177 GO:0003677
Gso19g1481 494 SMART rav1_2 252 315 IPR001471 GO:0003700|GO:0006355
Gso19g1481 494 SMART rav1_2 160 222 IPR001471 GO:0003700|GO:0006355
Gso19g1481 494 Gene3D AP2/ERF domain 251 310 IPR036955 GO:0003700|GO:0006355
Gso19g1481 494 Gene3D AP2/ERF domain 159 218 IPR036955 GO:0003700|GO:0006355
Gso19g1481 494 Pfam AP2 domain 251 301 IPR001471 GO:0003700|GO:0006355
Gso19g1481 494 Pfam AP2 domain 160 208 IPR001471 GO:0003700|GO:0006355
Gso19g1481 494 MobiDBLite consensus disorder prediction 129 161 - -
Gso19g1481 494 CDD AP2 160 218 IPR001471 GO:0003700|GO:0006355
Gso19g1481 494 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 37 486 - -
Gso19g1481 494 SUPERFAMILY DNA-binding domain 251 310 IPR016177 GO:0003677
Gso19g1481 494 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 37 486 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1481 Gso-Chr19 43644494 43648971 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1481 145 335 AP2-EREBP Transcription Factor Family AT4G36920 81.443 9.98e-97 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Gso19g1481 AP2 2e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1481 K09284 - gmx:100797238 977.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1481 19 43644494 43648971 Gso3g1496 3 40860169 40863375 GST