Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1480 ATGGACGGGCCTGGACAAGTAAATATATTTATATTCAACGTCTCAAACCCCAAACCCTTAAACCCTAGTTTTGTGAATACCACACCCATGGCAGCAGCAGCTCGCCCTCTCGTCTCCGTCCAAACCCTAGAGGGCGATGCAGCCCCCACCGTCCCTCTCCCCGACGTCATGAAGGCCTCCATTCGTCCTGACATCGTCAATTTCGTTCATTCCAACATTTCTCGCAACAGCCGCCAACCCTACGCCGTCAGCAAGCGCGCCGGCCACCAAACCTCCGCCGAGTCCTGGGGCACCGGCCGCGCCGTCTCACGTATTCCGCGAGTCCCCGGCGGAGGAACCCACCGTGCCGGCCAGGGAGCCTTCGGAAACATGTGCCGCGGCGGCCGCATGTTCGCCCCGACCAAGATCTGGCGCCGCTGGCACCGCAAGATCAACGTCCAGCAGAAGCGCCACGCCGTCGTCTCCGCCATTGCCGCCTCCGCAATCCCCTCCCTGGTCCAGGCTCGCGGCCACCGCATCGAGTCCGTCCCTGAACTCCCCCTCGTCGTCAGCGACACCGTCGAAAGCGTCGAGAAATCCAAAGAAGCCGTGAAAATTCTCCAGAAAATCGGCGCATTCCCCGACGCGGAGAAAGCGAAACTGAGCCACGGAATTCGTCCCGGGAAGGGAAAAATGAGGAACCGCAGGCACATTTCACGGAAGGGTCCTCTTATCGTGTACGGAACAGAAGGTGCTAAGGTCGTTAAAGCCTTCAGGAACATTCCTGGTGTTGAGGTGGCAAATGTTGATAGGCTCAACCTTCTGAAGCTGGCACCCGGAGGCCACCTCGGGAGGTTCATTATTTGGACCAAGTCCGCGTTTGAGAAATTGGACTCTATCTATGGATCCTTCCATAAGGCTTCTGAGAAGAAAAAGGGCTACCTGCTTCCTAGGCCCAGAATGGTTAACTCGGACTTGGCCCGCATCATTAACTCCGATGAGGTCCAGTCCGTGGTCAGGCCCATTAAGAAAGATGTTAAGAGAGCTCCTCTCAAGAAGAACCCTCTCACCAACCTCAATGCGATGTTGAAGCTCAATCCCTATGCCAAGACCGCTAAGAGAATGGCTCTTCTCGCTGAGAAGCAGCGCATTGTGGCAAAGAAGGAGAAGCTTGATAAGAAGCGCAACATTGTCTCCAAGGAGGAGGCTTCTGCTATCAAGTCTGCTGGAAAATCGTGGTATCAAACTATGGTGTCTGACTCTGATTATGCAGATTTTGACAACTTCTCTAAGTGGCTAGGTGTTTCCCAGTAA 1293 0.5507 MDGPGQVNIFIFNVSNPKPLNPSFVNTTPMAAAARPLVSVQTLEGDAAPTVPLPDVMKASIRPDIVNFVHSNISRNSRQPYAVSKRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVQQKRHAVVSAIAASAIPSLVQARGHRIESVPELPLVVSDTVESVEKSKEAVKILQKIGAFPDAEKAKLSHGIRPGKGKMRNRRHISRKGPLIVYGTEGAKVVKAFRNIPGVEVANVDRLNLLKLAPGGHLGRFIIWTKSAFEKLDSIYGSFHKASEKKKGYLLPRPRMVNSDLARIINSDEVQSVVRPIKKDVKRAPLKKNPLTNLNAMLKLNPYAKTAKRMALLAEKQRIVAKKEKLDKKRNIVSKEEASAIKSAGKSWYQTMVSDSDYADFDNFSKWLGVSQ* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1480 430 SUPERFAMILY Ribosomal protein L4 37 292 IPR023574 GO:0003735|GO:0005840|GO:0006412
Gso19g1480 430 Pfam 60S ribosomal protein L4 C-terminal domain 305 376 IPR025755 -
Gso19g1480 430 PANTHER 60S RIBOSOMAL PROTEIN L4 20 430 IPR045240 -
Gso19g1480 430 ProSitePatterns Ribosomal protein L1e signature. 145 171 IPR013000 -
Gso19g1480 430 PANTHER BNAC03G35890D PROTEIN 20 430 - -
Gso19g1480 430 MobiDBLite consensus disorder prediction 80 98 - -
Gso19g1480 430 Gene3D - 32 333 IPR023574 GO:0003735|GO:0005840|GO:0006412
Gso19g1480 430 MobiDBLite consensus disorder prediction 80 121 - -
Gso19g1480 430 Pfam Ribosomal protein L4/L1 family 51 291 IPR002136 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1480 Gso-Chr19 43635186 43636897 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1480 31 430 Cytoplasmic Ribosomal Protein Gene Family AT3G09630 78.960 0.0 653
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1480 K02930 - gmx:100796712 849.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1480 19 43635186 43636897 Gso3g1495 3 40844783 40846564 GST
Gso19g1480 19 43635186 43636897 Gso10g0424 10 4504227 4506927 PCT
Gso10g0424 10 4504227 4506927 Gso19g1480 19 43635186 43636897 PCT