Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1479 ATGGCCATGAAGCCCTCAACTTCCACAAGTGGGTCTGGCAAGAAGATTAGAAAGCCTTATACTATTACCAAATCTAGGGAGAGCTGGTCTGAGGAAGAGCACGACAAGTTTCTCGAAGCTCTTCAACTATTTGACAGAGATTGGAAGAAAATTGAAGATTTTGTTGGTTCAAAATCAGTTATTCAGATTAGAAGTCATGCCCAGAAGTACTTCTTGAAAGTTCAAAAGAGCGGGACAGTAGCACATGTGCCTCCTCCTCGGCCTAAGCGCAAAGCTTCTCATCCTTATCCACAAAAGGCATCCAAAAATGTTTTGTTGCCAATGCCAGCTTCCATGGTTTATGTTTCTTCCACTAGTACCCTTCCACCAGGGTATGTCACATGGGATGAAAATTCCTTGCTCATGAATTCTGGATCCAACAAATCAGTGCCTTGTAAGGATGAGCTCGCCAATCTTCTTGGAAATGAAGCTGATATTGGATCAAAGGGGATAACACGAATTGACCACAGCAGTCTTAGTGGTGTTGGGAACTCTACTAGAAATCTGCCTGCTACTGAGATGCCAAAACAAGGGAAACAGGCTCAGGTTATTCATGGTTTGCCAGATTTTGCTGATGTTTACAGCTTCATTGGAAGTGTTTTTGATCCAGACACAGAAGGCCATGTCCAGAAGCTGAAGGAAATGGATCCTATAAATTTTGAAACTGTTTTGTTGTTAATGAAAAACCTCACTGTCAATTTGTCTAGTCCTGACTTTGAGCCCGTTAGGGAGGTCATGTCATCATACGATGTCCATACAAAAACAGTAGGAGTTACCGCAGGAATTGACGTCAAGAAGCAGACAAATGATCTATCATGTCAAACAGCTTGA 870 0.423 MAMKPSTSTSGSGKKIRKPYTITKSRESWSEEEHDKFLEALQLFDRDWKKIEDFVGSKSVIQIRSHAQKYFLKVQKSGTVAHVPPPRPKRKASHPYPQKASKNVLLPMPASMVYVSSTSTLPPGYVTWDENSLLMNSGSNKSVPCKDELANLLGNEADIGSKGITRIDHSSLSGVGNSTRNLPATEMPKQGKQAQVIHGLPDFADVYSFIGSVFDPDTEGHVQKLKEMDPINFETVLLLMKNLTVNLSSPDFEPVREVMSSYDVHTKTVGVTAGIDVKKQTNDLSCQTA* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1479 289 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 21 75 IPR017930 -
Gso19g1479 289 ProSiteProfiles Myb-like domain profile. 21 71 IPR001005 -
Gso19g1479 289 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 24 73 IPR006447 GO:0003677
Gso19g1479 289 MobiDBLite consensus disorder prediction 1 16 - -
Gso19g1479 289 SMART sant 25 73 IPR001005 -
Gso19g1479 289 ProSiteProfiles SANT domain profile. 24 75 IPR017884 -
Gso19g1479 289 SUPERFAMILY Homeodomain-like 20 76 IPR009057 -
Gso19g1479 289 CDD SANT 28 71 IPR001005 -
Gso19g1479 289 Gene3D - 29 76 - -
Gso19g1479 289 MobiDBLite consensus disorder prediction 1 31 - -
Gso19g1479 289 PANTHER SWI/SNF COMPLEX-RELATED 3 283 - -
Gso19g1479 289 Pfam Myb-like DNA-binding domain 26 71 IPR001005 -
Gso19g1479 289 PANTHER PROTEIN REVEILLE 8 3 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1479 Gso-Chr19 43629054 43632794 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gso19g1479 Myb_DNA-binding 2e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1479 - - gmx:100783482 570.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1479 19 43629054 43632794 Gso3g1494 3 40839732 40844646 GST
Gso19g1479 19 43629054 43632794 Gso10g0423 10 4492809 4498209 PCT
Gso10g0423 10 4492809 4498209 Gso19g1479 19 43629054 43632794 PCT