Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1474 ATGCATATCAAGGAAGCAGAAAGGGTGGTCATTGCCAAACCAGTTGCATCAAGGCCAACTTGTTCTACTTTCAAATCTTTCTCAGAGCTCCTAGCAGGTGCAATCAATGCTTCTCCCGCTATTCCATCTTCTCAAACAACAGTTTCTGCCATTAGACCAAAGACAGTGAGGTTCAAGCCAGCAATGAATCAACCCCCTTCTGGGTTTGTTTTTTCTCAGGCTGATACTTTTGGAGCTGCACTTGATAATTCCTCTGAGATGAGTCCTAAACTTGACACCAAACAGTCCCTCATATACAAGCCAACGGCAAAACTCGTATCAAAGACAACTGTGTCTCTTTTGGCAAATATGGGAAATTGCAGTACTAGTCGGCAACAAACACAGCAACCAATGGAGGCCAATTTTCAACATTCCATCCATGAAAAATTTAGAACCAACACGAGCTCAAATCTTGATCAGAGTATTACCCCGCAAACAGAAATAAATTATCAGAGCAGTGAACCTAGTAAGATGGTGCAGCAGAACATAGAGGAGGACCAAAAAGTTTTAACATCCTCAGTCAATTGTGATCGACCTTCTTATGATGGTTACAACTGGAGAAAATATGGTCAAAAGCAAGTAAAAGGGAGCGAGTACCCGCGAAGTTACTACAAGTGCACACATCCTAATTGTCCAGTGAAAAAGAAGGTTGAAAGATCATTTGATGGGAATATTGCAGAAATTGTTTATAAAGGTGAACACAATCATTCGAAGCCACAGCTTCACAAGCGAAACTCAGCAGCAGGGACACAAGGATCAGGGGTTGTGTCTGATGGAATAGTTCAAGATATGTGGAGTAATAGTCACAGTGAGAGGAATGAAGGCAATGAAGTTAGAATTGAGAACACAGGACTGTCTATGCATTCAGATTATTATGTCAAAGTTCCACGGCCTAATGATTCTGCTCTAAATGTTGGTGCAACTAATGCTGGTGGAGTAAGCACGGAAAACTCGTGTGGTCTAAGTGGGGAATGTGAGGAAGGAAGCAAGGGATTTGAGGCACAGGAAGATGAACCCAGATATAAAAGAAGGAAAAATGAGAATCAATCCAATGAAGCAGCACTATCAGAGGAAGGATTAGTAGAGCCACGGATTGTGATGCAAAGTTTTATGGATTCTGAAATACTTGGAGATGGCTTTCGCTGGAGGAAATATGGGCAGAAGGTGGTGAAGGGCAATCCATATCCCAGAAGTTACTATAGATGTACTAATATCAAATGTAACGTTCGCAAACATGTGGAGAGAGCCATAGATGACCCAAGATCGTTTGTGACTACATATGAGGGAAAGCACAATCATGAGATGCCACTCAAGAACACAGGAACTGTAGCATCTGAAAGAGATTCACAGGCTTCTCTTAGTAAAGATAAAGCATGA 1416 0.4174 MHIKEAERVVIAKPVASRPTCSTFKSFSELLAGAINASPAIPSSQTTVSAIRPKTVRFKPAMNQPPSGFVFSQADTFGAALDNSSEMSPKLDTKQSLIYKPTAKLVSKTTVSLLANMGNCSTSRQQTQQPMEANFQHSIHEKFRTNTSSNLDQSITPQTEINYQSSEPSKMVQQNIEEDQKVLTSSVNCDRPSYDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSFDGNIAEIVYKGEHNHSKPQLHKRNSAAGTQGSGVVSDGIVQDMWSNSHSERNEGNEVRIENTGLSMHSDYYVKVPRPNDSALNVGATNAGGVSTENSCGLSGECEEGSKGFEAQEDEPRYKRRKNENQSNEAALSEEGLVEPRIVMQSFMDSEILGDGFRWRKYGQKVVKGNPYPRSYYRCTNIKCNVRKHVERAIDDPRSFVTTYEGKHNHEMPLKNTGTVASERDSQASLSKDKA* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1474 471 ProSiteProfiles WRKY domain profile. 384 449 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso19g1474 471 SMART WRKY_cls 389 448 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso19g1474 471 SMART WRKY_cls 193 251 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso19g1474 471 MobiDBLite consensus disorder prediction 444 471 - -
Gso19g1474 471 PANTHER WRKY TRANSCRIPTION FACTOR 44 7 452 - -
Gso19g1474 471 MobiDBLite consensus disorder prediction 336 368 - -
Gso19g1474 471 SUPERFAMILY WRKY DNA-binding domain 192 252 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso19g1474 471 Pfam WRKY DNA -binding domain 391 447 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso19g1474 471 Pfam WRKY DNA -binding domain 195 249 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso19g1474 471 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 7 452 IPR044810 GO:0003700
Gso19g1474 471 SUPERFAMILY WRKY DNA-binding domain 382 449 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso19g1474 471 MobiDBLite consensus disorder prediction 342 364 - -
Gso19g1474 471 Gene3D WRKY domain 375 450 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso19g1474 471 Gene3D WRKY domain 177 253 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso19g1474 471 MobiDBLite consensus disorder prediction 246 268 - -
Gso19g1474 471 ProSiteProfiles WRKY domain profile. 195 252 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1474 Gso-Chr19 43583599 43592270 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1474 92 450 WRKY Transcription Factor Family AT2G37260 45.119 1.51e-86 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gso19g1474 WRKY 7.3e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1474 - - gmx:100794069 957.207
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1474 19 43583599 43592270 Gso3g1489 3 40805402 40814797 GST