Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1462 ATGGGGAAGGGAGGCCAAGATTATGGGAAACGAGAGAACACGAGTTCTGATGCTTCGGACCGTGAAATCTTCAAGGCGTGGGCGAAGGACGTCCGGGAGTGCGAGGAGCAATTCAAGGTTAATGTGAAGGTTGGTTTGAATCACGATGAGGTCGAGAATCGGCGCAAGATCTATGGATTGAACGAGTTGGAGAAGCACGAGGGGCAATCGATATGGAGTTTGATTCTGGAGCAGTTCAACGACACGCTCGTTCGGATTCTCCTCGCCGCTGCCATCATTTCCTTCGTGCTCGCTTGGTACGACGGCGACGAGGGCGGCGAGATGGAGATAACGGCGTTCGTGGAGCCTCTGGTGATTTTCCTGATACTAATCGTGAACGCAATTGTTGGCGTGTGGCAGGAGAGCAATGCGGAGAAGGCGCTTGATGCGCTGAAAGAGATTCAATCTGAGCACGCGGTCGTGATTCGAGAGGGCGCGAAAATTTCTAATTTGCCGGCGAAGGAACTTGTTCCCGGCGACATCGTTGAGCTTAAGGTTGGGGATAAGGTGCCTGCGGATATGCGTGTTGTGGAATTGATCAGTTCCACTTTGCGATCGGAGCAGGGTTCTTTGACTGGAGAGAGTGAAGCTGTGAATAAGACTAACAAGCGTGTGGATGAGGATGCTGATATTCAGGGGAAGAGGTGTATGGTTTTCGCGGGGACCACTGTTGTTAACGGGAATTGCATTTGCTTGGTCACTCAGACCGGCATGGACACCGAAATTGGGAAGGTGCATATGCAGATACACGTTGCCTCACAGAGCGAGGAGGATACCCCGTTGAAGAAGAAGCTCAATGAGTTTGGGGAGAAGCTAACCATGATAATTGGACTGATATGTATTTTGGTTTGGCTCATCAATGTTAAGTACTTCCTCTCTTGGGAGTATGTGGATGGATGGCCCAGGAACTTCAAGTTTTCCTTCGAGAAGTGTACCTATTACTTTGAGATTGCTGTGGCACTGGCTGTGGCCGCTATTCCGGAAGGTTTGCCTGCGGTCATCACGACTTGCCTGGCTCTTGGTACTCGAAAGATGGCCCAGAAGAATGCCCTGGTCCGGAAGTTGCCGAGCGTGGAGACTCTGGGTTGTACCACTGTTATTTGTTCGGATAAAACTGGAACATTGACTACTAACCAAATGGCTGTGGCAAAATTAGTTGCAATTGGCCATAATGTGGACACACTAAGGGCTTTCAAGGTGGAAGGAACTACATACAATCCAGCCGATGGCCAAATAGAGAACTGGCCAACTAGTGGATTGGATGCTAATCTTCAAATGATAGCAAAAATAGCTGCGGTCTGTAATGATGCTGGAGTCGCACAGTCAGAGCATAAGTTTGTCGCTCATGGAATGCCTACTGAAGCAGCCTTGAAGGTTTTGGTAGAGAAGATGGGCCTTCCTGAAGGATCCAAGGTTGCACAGTCAGCAAGCACACGTACCTTGCTGCGTTGCTGTGAATGGTGGAGTGAGCATGACCAACGACTTGCTACTCTTGAGTTTGACCGTGATAGGAAGTCAATGGGTGTTATTGTGGACTCTGGTTTAGGCAAAAGGTCGCTTCTAGTTAAGGGTGCTGTGGAAAATGTGTTGGACAGAAGCTCTAAAATTCAGTTGCGTGATGGTTCTATAGTGAACCTAGATGATAATGCAAGGAACCTTGTATTGCAAGCTCTCCATGAAATGTCGACTAGCGCATTGCGCTGTTTGGGATTTGCATACAAGGATGAACTCCCCAAATTTGAAAACTACAGTGGTAATGAAGATCATCCAGCTCACCAGCTTTTGCTTAATCCTTCCAACTATTCATCAATTGAAAGTGAACTTATTTTTGTTGGCTTGGTTGGATTGAGGGATCCTCCTAGGGAGGAAGTATACCAAGCAATTGAAGACTGCAGAGAAGCTGGAATTCGTGTTATGGTTATTACTGGAGACAACAAGAACACCGCTGAAGCTATATGCCGTGAAATAGGTGTATTTTCTCCAGATGAAGACATTAGTTCTAAAAGTTTAACTGGTAGAGATTTTATGGAACTGCGTGATAAAAAGACCTATCTGAGACAGCCTGGTGGGCTTTTGTTTTCAAGGGCTGAACCTAGGCACAAGCAAGAAATTGTGAGGCTGCTGAAAGAGGAAGGGGAAGTGGTAGCCATGACTGGGGATGGTGTTAATGATGCTCCTGCCTTGAAGCTTGCAGACATTGGTATTGCAATGGGCATTGCAGGGACAGAGGTGGCAAAGGAAGCTTCAGATATGGTGTTGGCAGATGATAATTTTAGTTCAATTGTTGCTGCTGTTGGTGAGGGTAGATCTATCTACAATAATATGAAGGCCTTTATCAGGTATATGATCTCTTCCAATATTGGCGAGGTTGCTTCTATATTTTTAACAGCTGCATTAGGTATTCCTGAAGGATTGATACCTGTCCAGCTTCTGTGGGTCAATCTTGTCACTGATGGACCCCCTGCAACAGCTTTGGGATTTAATCCTCCAGATAAGGATATAATGAAAAAGCCTCCTCGTCACAGTGATGACTCATTAATTAATTTGTGGATTTTATTCCGCTATCTGGTTATTGGGATTTATGTTGGATTAGCTACAGTTGGTATCTTCATCATATGGTATACACATGGTTCCTTCTTTGGTATTGACCTTAGTGGGGATGGACATAGTCTTGTGACTTACACCCAACTTGCCAACTGGGGTCAATGCTCCTCATGGCAGAACTTCACTGCTTCTCCATTCACTGCTGGTGCTAAAACTATCACGTTTGATAACCCCTGTGATTACTTTTCAACTGGTAAAGTGAAAGCTATGACACTGTCACTTTCTGTGTTGGTAGCCATTGAAATGTTCAACTCTCTCAATGCCCTATCTGAAGATGGAAGCCTTTTGACAATGCCCCCTTGGGTCAACCCTTGGCTTCTTTTGGCAATGTCAGTATCATTTGGTCTGCACTTTTTGATCTTGTACGTGCCATTCTTAGCCCAAGTATTTGGTATCGTGCCTCTGAGCTTCAACGAGTGGCTTTTGGTTTTGGTTGTTGCACTTCCGGTCATTCTAATTGACGAGATTCTGAAATTTGTGGGGAGGTGTACAAGTTCTCGAGCATCAAGTGCAAGAAAATCAAAGCAAAAATCAGAGTAG 3183 0.459 MGKGGQDYGKRENTSSDASDREIFKAWAKDVRECEEQFKVNVKVGLNHDEVENRRKIYGLNELEKHEGQSIWSLILEQFNDTLVRILLAAAIISFVLAWYDGDEGGEMEITAFVEPLVIFLILIVNAIVGVWQESNAEKALDALKEIQSEHAVVIREGAKISNLPAKELVPGDIVELKVGDKVPADMRVVELISSTLRSEQGSLTGESEAVNKTNKRVDEDADIQGKRCMVFAGTTVVNGNCICLVTQTGMDTEIGKVHMQIHVASQSEEDTPLKKKLNEFGEKLTMIIGLICILVWLINVKYFLSWEYVDGWPRNFKFSFEKCTYYFEIAVALAVAAIPEGLPAVITTCLALGTRKMAQKNALVRKLPSVETLGCTTVICSDKTGTLTTNQMAVAKLVAIGHNVDTLRAFKVEGTTYNPADGQIENWPTSGLDANLQMIAKIAAVCNDAGVAQSEHKFVAHGMPTEAALKVLVEKMGLPEGSKVAQSASTRTLLRCCEWWSEHDQRLATLEFDRDRKSMGVIVDSGLGKRSLLVKGAVENVLDRSSKIQLRDGSIVNLDDNARNLVLQALHEMSTSALRCLGFAYKDELPKFENYSGNEDHPAHQLLLNPSNYSSIESELIFVGLVGLRDPPREEVYQAIEDCREAGIRVMVITGDNKNTAEAICREIGVFSPDEDISSKSLTGRDFMELRDKKTYLRQPGGLLFSRAEPRHKQEIVRLLKEEGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDNFSSIVAAVGEGRSIYNNMKAFIRYMISSNIGEVASIFLTAALGIPEGLIPVQLLWVNLVTDGPPATALGFNPPDKDIMKKPPRHSDDSLINLWILFRYLVIGIYVGLATVGIFIIWYTHGSFFGIDLSGDGHSLVTYTQLANWGQCSSWQNFTASPFTAGAKTITFDNPCDYFSTGKVKAMTLSLSVLVAIEMFNSLNALSEDGSLLTMPPWVNPWLLLAMSVSFGLHFLILYVPFLAQVFGIVPLSFNEWLLVLVVALPVILIDEILKFVGRCTSSRASSARKSKQKSE* 1061
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1462 1060 Gene3D - 77 1043 - -
Gso19g1462 1060 SUPERFAMILY Calcium ATPase, transmembrane domain M 25 1044 IPR023298 -
Gso19g1462 1060 Gene3D - 391 632 IPR023299 GO:0000166
Gso19g1462 1060 SUPERFAMILY HAD-like 379 835 IPR036412 -
Gso19g1462 1060 Pfam Cation transporting ATPase, C-terminus 816 1041 IPR006068 -
Gso19g1462 1060 SFLD Haloacid Dehalogenase 362 783 - -
Gso19g1462 1060 PANTHER RETICULUM [ER]-TYPE CALCIUM ATPASE, PUTATIVE-RELATED 4 1056 - -
Gso19g1462 1060 Pfam Cation transporter/ATPase, N-terminus 27 94 IPR004014 -
Gso19g1462 1060 Pfam E1-E2 ATPase 147 361 - -
Gso19g1462 1060 SUPERFAMILY Calcium ATPase, transduction domain A 150 258 IPR008250 -
Gso19g1462 1060 Gene3D - 45 265 - -
Gso19g1462 1060 Gene3D - 378 776 IPR023214 -
Gso19g1462 1060 PRINTS P-type cation-transporting ATPase superfamily signature 200 214 - -
Gso19g1462 1060 PRINTS P-type cation-transporting ATPase superfamily signature 381 395 - -
Gso19g1462 1060 PRINTS P-type cation-transporting ATPase superfamily signature 625 636 - -
Gso19g1462 1060 PRINTS P-type cation-transporting ATPase superfamily signature 647 657 - -
Gso19g1462 1060 PRINTS P-type cation-transporting ATPase superfamily signature 731 750 - -
Gso19g1462 1060 PRINTS P-type cation-transporting ATPase superfamily signature 755 767 - -
Gso19g1462 1060 Pfam haloacid dehalogenase-like hydrolase 378 745 - -
Gso19g1462 1060 PANTHER CALCIUM-TRANSPORTING ATPASE 4 1056 - -
Gso19g1462 1060 SFLD p-type atpase 362 783 IPR044492 -
Gso19g1462 1060 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 388 629 IPR023299 GO:0000166
Gso19g1462 1060 ProSitePatterns E1-E2 ATPases phosphorylation site. 383 389 IPR018303 -
Gso19g1462 1060 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 705 812 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gso19g1462 1060 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 320 402 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gso19g1462 1060 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 118 308 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gso19g1462 1060 SMART Cation_ATPase_N_a_2 25 99 IPR004014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1462 Gso-Chr19 43498031 43504609 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1462 1 1060 Primary Pumps ATPases(2) AT1G07670 80.339 0.0 1753
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1462 K01537 - gmx:100788807 2070.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1462 19 43498031 43504609 Gso3g1476 3 40726640 40733207 GST