Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1448 ATGTTAGGAATGAAGAGACATAGAGATAATGAAGGGTCAGAGAGCTTAGATTTGGCAAAATGTCTTGTGCTGTTCTCTTGTCCAATAGAAAGCAACAAGGCACAACAGAAAGGTTTTGGGGCTGTGGAATTTGAGTGCAAGACGTGCAGCCGCAAGTTCTCTTCTTTTCAAGCACTGGGAGGGCACAGGGCAAGCCACAAGAGGCAGAAGCTAGAGGGGGAAGAACTCAAAGAACAAGCCAAAACTCTTAGCTTGTGGAACAAACCAAAAATGCACGAGTGCTCCATTTGTGGACTTGAATTCTCTCTGGGCCAGGCTCTGGGTGGCCACATGAGAAAACACAGAGCTGCTCTCAACGAAGGGTTTCCTATAATTCCTTCTATCGACCAAGTTATTGCGAAAATCCCGGTTCTGAAAAGGTCGAATAGCACCAGAGTTATGTGCTTGGACTTGGAGTTACACCTGTAG 468 0.4615 MLGMKRHRDNEGSESLDLAKCLVLFSCPIESNKAQQKGFGAVEFECKTCSRKFSSFQALGGHRASHKRQKLEGEELKEQAKTLSLWNKPKMHECSICGLEFSLGQALGGHMRKHRAALNEGFPIIPSIDQVIAKIPVLKRSNSTRVMCLDLELHL* 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1448 155 SUPERFAMILY beta-beta-alpha zinc fingers 44 114 IPR036236 -
Gso19g1448 155 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 114 IPR013087 -
Gso19g1448 155 ProSitePatterns Zinc finger C2H2 type domain signature. 46 66 IPR013087 -
Gso19g1448 155 Gene3D Classic Zinc Finger 42 114 - -
Gso19g1448 155 PANTHER ZINC FINGER PROTEIN ZAT5 4 155 - -
Gso19g1448 155 SMART c2h2final6 92 114 IPR013087 -
Gso19g1448 155 SMART c2h2final6 44 66 IPR013087 -
Gso19g1448 155 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 4 155 - -
Gso19g1448 155 ProSitePatterns Zinc finger C2H2 type domain signature. 94 114 IPR013087 -
Gso19g1448 155 ProSiteProfiles Zinc finger C2H2 type domain profile. 44 71 IPR013087 -
Gso19g1448 155 Pfam C2H2-type zinc finger 44 69 - -
Gso19g1448 155 Pfam C2H2-type zinc finger 92 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1448 Gso-Chr19 43368647 43369462 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1448 4 153 C2H2 Transcription Factor Family AT2G37430 42.857 1.35e-33 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso19g1448 zf-C2H2_6 8.6e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1448 - - gmx:100500607 317.775
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1448 19 43368647 43369462 Gso3g1459 3 40592014 40592755 GST
Gso19g1448 19 43368647 43369462 Gso10g0394 10 4165515 4166278 PCT
Gso10g0394 10 4165515 4166278 Gso19g1448 19 43368647 43369462 PCT