Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1447 ATGAAGAGACAGAGAGATTTCAAGGGGTTTGAGAGCATAGATTTGGCAAATTGTCTAATGATGCTCTCTCATCCCCAACAAAATGAGAAACTACTTCAAAAAAAAATTGAGGCTGTGGAATTTGAGTGCAAGACATGCAACCGCAAATTCTCTTCCTTTCAAGCATTGGGTGGCCATAGGGCTAGCCACAAAAGGTCGAAACTTGAGGGAGATCATGAACTCAAAGCACATGCTATATCTCTAAGTTTGGCAAACAAACCCAAAATGCACGAGTGTTCCATTTGTGGACAAGAATTCTCATTGGGACAAGCACTTGGGGGTCACATGAGAAGGCACAGAACAACCATCCACGAAGATTTTTCTTCAATAAAACAGGTTATTACACAAATGCCTGTTTTGAAAAGATCGAATAGCACGAGGGTGGTTACGTGCTTGGACTTGAACCTAACACCGCTTGAGAACGACTTGAAGTTGTTGTTTGGAAAGATGGCACCGAATGCTGGTGCCTTTGCCTGA 516 0.4264 MKRQRDFKGFESIDLANCLMMLSHPQQNEKLLQKKIEAVEFECKTCNRKFSSFQALGGHRASHKRSKLEGDHELKAHAISLSLANKPKMHECSICGQEFSLGQALGGHMRRHRTTIHEDFSSIKQVITQMPVLKRSNSTRVVTCLDLNLTPLENDLKLLFGKMAPNAGAFA* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1447 171 PANTHER AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN, PUTATIVE-RELATED 11 166 - -
Gso19g1447 171 PANTHER ZINC FINGER PROTEIN ZAT5 11 166 - -
Gso19g1447 171 SMART c2h2final6 90 112 IPR013087 -
Gso19g1447 171 SMART c2h2final6 41 63 IPR013087 -
Gso19g1447 171 ProSiteProfiles Zinc finger C2H2 type domain profile. 41 68 IPR013087 -
Gso19g1447 171 Gene3D Classic Zinc Finger 38 112 - -
Gso19g1447 171 SUPERFAMILY beta-beta-alpha zinc fingers 41 112 IPR036236 -
Gso19g1447 171 ProSiteProfiles Zinc finger C2H2 type domain profile. 90 112 IPR013087 -
Gso19g1447 171 ProSitePatterns Zinc finger C2H2 type domain signature. 92 112 IPR013087 -
Gso19g1447 171 Pfam C2H2-type zinc finger 90 114 - -
Gso19g1447 171 Pfam C2H2-type zinc finger 41 65 - -
Gso19g1447 171 ProSitePatterns Zinc finger C2H2 type domain signature. 43 63 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1447 Gso-Chr19 43363451 43364270 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1447 1 162 C2H2 Transcription Factor Family AT2G37430 50.877 8.17e-49 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso19g1447 zf-C2H2_6 1.5e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1447 - - gmx:100527151 347.821