Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1440 ATGGCTTTTATGTCTGGAGTTCAGCGTCTGCTTCGCCGCACTCCACTTGTTCATTCCCACTATGCTTCTATTCGTCTCAGCTCAACTCTCACTTCCCCCAAACTTTTCGTAAGCGGTCTTTGTAGACTGACAACAGATGAAAAACTTAAGGAAGCATTTTCGTCTTTTGGGCAGCTGGTTGAAGCTAAGGTGATAATTGATAGAGCCTCTGGAAGATCAAAGGGGTTTGCTTTTGTAACTTATACAACCATAGAGGAAGCTGAAAAGGCAAGAGAAGGAATGAACGCTAAATTTTTGGATGGATGGGTTATATTTGTTGATCCTGCCAAGCCAAGAGAGCCCAGACCTCCCCAGCAGTCACAGTCTCAACCCTCTGAAACAGGTTTCACTGTCAACAAAACGGTTGGGTGGTGTGGTTGA 420 0.45 MAFMSGVQRLLRRTPLVHSHYASIRLSSTLTSPKLFVSGLCRLTTDEKLKEAFSSFGQLVEAKVIIDRASGRSKGFAFVTYTTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRPPQQSQSQPSETGFTVNKTVGWCG* 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1440 139 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 33 111 IPR000504 GO:0003723
Gso19g1440 139 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 35 101 IPR000504 GO:0003723
Gso19g1440 139 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 139 - -
Gso19g1440 139 SUPERFAMILY RNA-binding domain, RBD 31 129 IPR035979 GO:0003676
Gso19g1440 139 PANTHER NUCLEOLAR PROTEIN 8 1 139 - -
Gso19g1440 139 Gene3D - 25 132 IPR012677 -
Gso19g1440 139 SMART rrm1_1 34 107 IPR000504 GO:0003723
Gso19g1440 139 MobiDBLite consensus disorder prediction 110 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1440 Gso-Chr19 43280742 43283522 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1440 34 126 Eukaryotic Initiation Factors Gene Family AT3G16380 36.458 3.88e-13 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1440 - - gmx:100306326 259.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1440 19 43280742 43283522 Gso3g1450 3 40505443 40507644 GST