Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1439 ATGACGTCGTTCTTGAAGCCTGAGAATGCTCTGAAAAGGGCGGAAGAATTAATCAATGTTGGGCAGAAGCAGGATGCTTTGCAGACTCTTCATGACCTCATCACCTCAAAACGATACAGAGCATGGCAGAAGACACTTGAAAGGATTATGTTCAAGTATGTGGAACTTTGCGTCGACATGCGAAAAGGCCGTTTTGCTAAAGACGGGTTAATTCAGTATAGGATTATATGTCAACAAGTGAACGTTAGTTCACTGGAGGAGGTCATAAAGCATTTTATGCAGCTTTCTACCGAGAAAGCTGAACAGGCCCGTAGCCAGGCACAGGCACTAGAAGAAGCCCTTGATGTTGATGATTTAGAGGCCGATAAAAGGCCGGAGGACCTGATGTTGAGCTATGTCAGTGGCGAGAAAGGGAAAGACAGATCTGATCGGGAGACTGTTACCCCCTGGTTTAAGTTTCTTTGGGAAACTTATAGGACAGTGCTGGAAATATTGAGGAACAACTCAAAGCTGGAAGCCTTATATGCTATGACAGCTCATCGAGCTTTCCAGTTCTGTAAGCAATATAAGCGAACAACAGAGTTACGCAGACTGTGCGAAATCATTAGAAACCATTTGGCTAATCTTAATAAATATCGTGACCAACGAGACCGGCCTGATCTTTCAGCTCCTGAAAGCTTGCAACTGTATCTTGATACAAGATTTGAGCAGCTGAAAATTGCTACTGAACTTGGACTCTGGCAGGAAGCCTTCAGGTCAGTGGAGGATATACATGGACTGATGTGCTTGGTCAAGAAAACACCCAAGCCATCCTTGATGGTTGTTTACTATGTGAAGCTGACAGAAATATTTTGGATATCGTCAAGTCATCTGTATCATGCATATGCTTGGTTCAAGCTCTTTTTATTACAAAAAAGCTTCAATAAGAATCTGAGTCAGAAGGATCTGCAATTAATTGCTTCATCTGTCGTTCTGGCTGCACTTTCAGTGCCTCCTCATGATCGAACCCATGGTGCATCTCATTTGGAACTGGAGCATGAAAAAGAGAGAAATTTGAGGATGGCTAATCTCATTGGCTTTAATCTTGAAACTAAACCTGAGAGCAGAGAAATGCTATCAAGAGCATCACTTCTTGCTGAACTGGCATCCAAGGGTGTGATGTCTTGTGTAACTCAGGAAGTGAAGGACATTTACCATCTTTTGGAACATGAGTTTTATCCCTCAGATCTTGCATTAAAAGCACTGCCCTTAATAACTAAAATCTCAAAGTTAGGGGGCAAGCTTTCTACTGCGTCATCTGTTCCAGAAGTGCAATTAGCTCAGTATGTTCCAGCACTGGAAAGACTGGCTACCATGAGGTTGCTGCAACAGGTGTCTAATGTGTACCAATCTATGAAGATTGAGACCTTATCAGGGATGATCCCCTTCTTTGACTTTGCTCAAGTGGAAAAGATTTCTGTAGATGCTGTTAAGCAGAAGTTTGTATCGATGAAAGTTGACCACATGAAAAATGCTGTGATTTTTAGTAAAAAGAGTCTCGAGTCTGATGGCTTAAGGGATCACTTGGGCAATTTTGCTGAACAATTAAATAAGGCAAGACAAATGATTTATCCTCCTGATGGGAGACCATCAAAACTTGGAGCTTTACTTCCAACTTTGACAGAGGTTGTGGCCAAAGAACACAAGAGGCTTCTTGCTCGAAAATCAATTATTGAGAAGAGGAAGGAAGAACAAGAACGACAGCTTCTTGAAATGGAACGGGAGGAGGAGTCGAAGAGGCTAAGACTTCAGAAAATAACCGAAGAAGCGGAACAAAGAAGGCTTGCCACTGAGTATGAACAGAGAAAGAATCAGAGGATCCTTAGGGAGATAGAGGAGAGAGAAAATGAAGAAGCACAAGCTTTACTCCAGGAAGCTGAAAAGCGTATTAAAAAGAAGGGAAAGAAACCAATCATAGAGGGGGACAAAATAACCAAGCAGACCTTGATGGAATTGACTTTGACCGAGCAACTCCGGGAAAGACAGGAAATGGAAAAGAAACTCCAGAAGTTAGCAAAAACCATGGATTATTTGGAAAGAGCCAAAAGAGAAGAGGCTGCTCCCCTGATTGAAGCTGCGTATCAACAGCGTCTAGTGGAAGAGAGACTTCTTCATGAGCGTGAGCAGCAGCAAGAGGTTGAACTGAGCAAACAGAGGCATGAGGGAGATCTCAAGGAGAAGGAGAGGCTTGTTCGAATGATGGGCAATAAGGAAGTATATCAAGCAAGGGTGGTTAGTCACCGCCAAGCAGAGTTTAACAGATTGAGAAGAGAACGTGAAGAGCGAATCTCTAGGATTTTACAGTCCAGGAGACAGGAGAGGGAAAAAATGAGGAAGTTGAAGTATTATCTCAAGTTAGAAGAAGAGAGACAACAAAAATTGCGTGAGGCGGAGGAAGCTCGGAAACGTGAAGATGCTGAAAGGAAAAAGAAGGAAGAGGAGGAGCGCCTGCGTAAATTGGAGGAGATAGCTGAAAAGCAGAGGCAGAGAGAGAGGGAGCTTGAAGAGAAAGAGAAACAAAGGAGAGAAGCATTGTTGGGTAGAGCTGCTGCTGAACCAGCTCCTCCTGCCCGTCCATTGGAATCGGGATCTGCTGCTCCTGCGGCAGCTGCCGCCGCCGCCGCTGCTCCAACACCTGGGAAATACGTACCTAAGTTCAGGCGAGAGAGAACCGAAAGCGCAGGAGCTGCGCCTCCTCCAGAAACAGATCGCTGGAACAGTAGCAGCAGGCCAGATGGTGACAGGTGGCGAAGTGATGATCGGAGAACCGCATTTGGTTCTGGTGGAGGTTCAAGGTCATCTTCTACTTGGTCATCTTCCAGGAATGCCCGTTGA 2874 0.4457 MTSFLKPENALKRAEELINVGQKQDALQTLHDLITSKRYRAWQKTLERIMFKYVELCVDMRKGRFAKDGLIQYRIICQQVNVSSLEEVIKHFMQLSTEKAEQARSQAQALEEALDVDDLEADKRPEDLMLSYVSGEKGKDRSDRETVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKQYKRTTELRRLCEIIRNHLANLNKYRDQRDRPDLSAPESLQLYLDTRFEQLKIATELGLWQEAFRSVEDIHGLMCLVKKTPKPSLMVVYYVKLTEIFWISSSHLYHAYAWFKLFLLQKSFNKNLSQKDLQLIASSVVLAALSVPPHDRTHGASHLELEHEKERNLRMANLIGFNLETKPESREMLSRASLLAELASKGVMSCVTQEVKDIYHLLEHEFYPSDLALKALPLITKISKLGGKLSTASSVPEVQLAQYVPALERLATMRLLQQVSNVYQSMKIETLSGMIPFFDFAQVEKISVDAVKQKFVSMKVDHMKNAVIFSKKSLESDGLRDHLGNFAEQLNKARQMIYPPDGRPSKLGALLPTLTEVVAKEHKRLLARKSIIEKRKEEQERQLLEMEREEESKRLRLQKITEEAEQRRLATEYEQRKNQRILREIEERENEEAQALLQEAEKRIKKKGKKPIIEGDKITKQTLMELTLTEQLRERQEMEKKLQKLAKTMDYLERAKREEAAPLIEAAYQQRLVEERLLHEREQQQEVELSKQRHEGDLKEKERLVRMMGNKEVYQARVVSHRQAEFNRLRREREERISRILQSRRQEREKMRKLKYYLKLEEERQQKLREAEEARKREDAERKKKEEEERLRKLEEIAEKQRQRERELEEKEKQRREALLGRAAAEPAPPARPLESGSAAPAAAAAAAAAPTPGKYVPKFRRERTESAGAAPPPETDRWNSSSRPDGDRWRSDDRRTAFGSGGGSRSSSTWSSSRNAR* 958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1439 957 Hamap Eukaryotic translation initiation factor 3 subunit A [EIF3A]. 1 957 IPR027512 GO:0005852
Gso19g1439 957 Gene3D UVR domain 217 268 - -
Gso19g1439 957 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT 1 906 IPR027512 GO:0005852
Gso19g1439 957 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT A 1 906 - -
Gso19g1439 957 Gene3D - 352 495 - -
Gso19g1439 957 Gene3D - 269 342 - -
Gso19g1439 957 Pfam PCI domain 374 510 IPR000717 -
Gso19g1439 957 MobiDBLite consensus disorder prediction 920 935 - -
Gso19g1439 957 SMART PINT_4 441 532 IPR000717 -
Gso19g1439 957 MobiDBLite consensus disorder prediction 806 957 - -
Gso19g1439 957 Coils Coil 615 649 - -
Gso19g1439 957 MobiDBLite consensus disorder prediction 940 957 - -
Gso19g1439 957 MobiDBLite consensus disorder prediction 806 859 - -
Gso19g1439 957 Coils Coil 667 697 - -
Gso19g1439 957 ProSiteProfiles PCI domain profile. 316 513 IPR000717 -
Gso19g1439 957 Coils Coil 561 602 - -
Gso19g1439 957 Coils Coil 93 120 - -
Gso19g1439 957 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 441 532 - -
Gso19g1439 957 Coils Coil 796 857 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1439 Gso-Chr19 43273415 43279770 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1439 1 941 Eukaryotic Initiation Factors Gene Family AT4G11420 71.341 0.0 1320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1439 K03254 - gmx:100782598 1575.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1439 19 43273415 43279770 Gso3g1449 3 40497612 40504424 GST