Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1435 ATGGCGGCGTCGCGGCGGCTCCGGGACCTCCAATCCCAACCGGCGAACAAGATCTGCGTCGACTGTTCCCAGAAGAACCCGCAATGGGCCTCGGTTTCCTACGGCGTCTTCATGTGCCTGGAGTGCTCCGGCAAGCACCGCGGCCTCGGCGTGCACATCTCCTTCGTGCGATCCGTGACGATGGATTCGTGGTCTGAAATCCAGATCAAGAAGATGGAAGCCGGAGGCAACGACAAACTCAACGCGTTTCTCTTGCAGTACGGCATCCCCAAGGAAACCGATATCGTCGCCAAGTATAACTCCAACGCTGCCTCCGTCTACCGCGACCGCATCCAGGCCCTCGCCGACGGCCGCCCCTGGCGGGATCCCCCCGTCGTCAAGGAAGCCGTCCGTTCCTCCTCCGCTGCATTCAAGGGCAAGCCGCCGCTCTCGGCTAGCAGCAACAACAACGGCGGATGGGATAATTGGGACGCCGACGACGGATTCGGATCGGCCAGGGGCGGGTCGGATCTCAGGCGGAACCAGTCCACCGGGGACGTGAGGGGATTCGGCGGCGGCGGGAACGTGGCGAGGTCAAAATCGACGCAGGATATTTACACGCGGGCTGAATTGGAAGCTTCTGCTGCCAACAAAGAAGAATTCTTCGCGCGGAAGAGAGCGGAGAATGAGTCGCGGCCGGAGGGGCTTCCGCCGTCGCAGGGTGGCAAGTATGTTGGATTCGGATCTGGCCCCGCCCCGCCCCAGAGGGGTAATCAGCAAAACGATTATTTCTCTGTCGTTTCTCAGGGACTTGGTAAATTATCCTTGGCTGCTGCTTCTGCTGCTAATGTTGTTCAGGCCGGGACAAAAGAGTTATCCGCTAAGGTAAAAGAGGGTGGTTATGATTACAAGGTCAATGAAACTGTCAATGTTGTCTCTCAGAAGACAACAGAGATTGGACAAAGGACATGGGGTATGATGAAAGGGGTCATGGCATTGGCTTCACAGAAGGTTGAGGAATTCGCTAGAGATAACCCGAATTGGACGTCTGATAACTGGCAACGAAATGAAAGTGATAGAAATGGTTTCTACCAGGAGTTCAATCGAGAGAATAATGGCCGGAATTCTTCTACCAGAGAAGGACAACATTCTTCAGGTGGACAAACTAATACTTTTCACTCAAGCTCTTGGGATGATTGGGGCCACAATGATTTTAGGAAGGAAGAGCCAGCTAAAGGATCAGCTCCTCAGTCATCAGGTGGGAAGTTTGATAATTATAACTCGAGCTCCTGGGATGATTGGGACCAGGAAGATACAAGGAAGAAAGAACCAGCTAAAGGGTCATCTGCCCGTAGCAGTGATGGTTGGGCTGGATGGGATAATGCCAAAGATGATGGATTTGATGATATCTATGGAAGTGCATCTAATAGTAAAGGTGTCACTCATAATGACAAGTCAGGTGCTGCCTGGACAGGAGGAGGCTTTCTCTAA 1470 0.5347 MAASRRLRDLQSQPANKICVDCSQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNDKLNAFLLQYGIPKETDIVAKYNSNAASVYRDRIQALADGRPWRDPPVVKEAVRSSSAAFKGKPPLSASSNNNGGWDNWDADDGFGSARGGSDLRRNQSTGDVRGFGGGGNVARSKSTQDIYTRAELEASAANKEEFFARKRAENESRPEGLPPSQGGKYVGFGSGPAPPQRGNQQNDYFSVVSQGLGKLSLAAASAANVVQAGTKELSAKVKEGGYDYKVNETVNVVSQKTTEIGQRTWGMMKGVMALASQKVEEFARDNPNWTSDNWQRNESDRNGFYQEFNRENNGRNSSTREGQHSSGGQTNTFHSSSWDDWGHNDFRKEEPAKGSAPQSSGGKFDNYNSSSWDDWDQEDTRKKEPAKGSSARSSDGWAGWDNAKDDGFDDIYGSASNSKGVTHNDKSGAAWTGGGFL* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1435 489 MobiDBLite consensus disorder prediction 359 391 - -
Gso19g1435 489 CDD ArfGap_ArfGap1 3 117 - -
Gso19g1435 489 SUPERFAMILY ArfGap/RecO-like zinc finger 5 111 IPR037278 -
Gso19g1435 489 MobiDBLite consensus disorder prediction 411 425 - -
Gso19g1435 489 ProSiteProfiles ARF GTPase-activating proteins domain profile. 4 120 IPR001164 GO:0005096
Gso19g1435 489 MobiDBLite consensus disorder prediction 131 194 - -
Gso19g1435 489 MobiDBLite consensus disorder prediction 359 489 - -
Gso19g1435 489 Pfam Putative GTPase activating protein for Arf 5 104 IPR001164 GO:0005096
Gso19g1435 489 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 1 412 IPR044519 GO:0005096|GO:0016192
Gso19g1435 489 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 408 489 IPR044519 GO:0005096|GO:0016192
Gso19g1435 489 MobiDBLite consensus disorder prediction 426 441 - -
Gso19g1435 489 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 1 412 - -
Gso19g1435 489 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 408 489 - -
Gso19g1435 489 PRINTS HIV Rev interacting protein signature 16 35 IPR001164 GO:0005096
Gso19g1435 489 PRINTS HIV Rev interacting protein signature 35 52 IPR001164 GO:0005096
Gso19g1435 489 PRINTS HIV Rev interacting protein signature 56 77 IPR001164 GO:0005096
Gso19g1435 489 Gene3D Arf GTPase activating protein 1 130 IPR038508 -
Gso19g1435 489 MobiDBLite consensus disorder prediction 219 249 - -
Gso19g1435 489 SMART arf_gap_3 1 120 IPR001164 GO:0005096
Gso19g1435 489 MobiDBLite consensus disorder prediction 139 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1435 Gso-Chr19 43248667 43252739 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1435 5 83 C2H2 Transcription Factor Family AT4G05330 52.500 1.04e-22 97.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1435 K12492 - gmx:100778302 955.281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1435 19 43248667 43252739 Gso3g1445 3 40469539 40473811 GST
Gso19g1435 19 43248667 43252739 Gso10g0380 10 4039119 4043603 PCT
Gso10g0380 10 4039119 4043603 Gso19g1435 19 43248667 43252739 PCT