Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1419 ATGGCTGCGGCTGCCAATCCTGTAGTTGGGTCCCATATTTGGGTGGAGGATCCTGATGTGGCTTGGATAGATGGTGAGGTCTTGGAGGTTAAAGGAGAAGAAATTAAAGTCCTTTGCACTTCAGGGAAGACGGTTGTTGTTAAAGCTTCCAGTATTTATCATAAAGATACAGAAGTCCCACCAAGTGGAGTGGATGATATGAGAAAGCTTGCATACCTGCATGAACCTGGAGTCCTAGATAATCTGAGATCAAGATATGATATAAACGAAATTTATACTTACACCGGGAATATATTGATTGCTGTGAACCCTTTCATAAAGCTTCCTCATTTATATGATAGCCATATGATGGCCCAATATAAAGGAGCAGCTTTTGGTGAGCTAAGTCCACATCCCTTTGCTGTTGCAGATGCAGCATATAGGCTTATGATAAATGAGGGAATCAGCCAGTCAATATTGGTTAGTGGTGAAAGTGGAGCTGGTAAAACAGAAAGTACCAAGTTGCTCATGAGGTATCTTGCTTACATGGGTGGGAGAGCTGCTGCTGCTGAAGGTAGAACTGTTGAGCAAAAGGTTCTGGAGTCCAATCCTGTTCTAGAAGCCTTTGGCAATGCAAAGACTGTTAGGAACAATAATTCAAGTCGTTTTGGTAAGTTTGTGGAGATTCAGTTTGACCAGAGTGGAAGAATATCAGGAGCTGCTATCAGGACTTATCTGCTTGAAAGATCACGTGTTTGCCAGGTGTCAGATCCAGAGAGGAACTATCATTGTTTCTACATGCTCTGTGCTGCACCTCCGGAGGATGTTAAAAAGTACAAATTAGGAGATCCAAGAATGTTTCATTATCTGAATCAATCAAATTGCTTTGAGTTGGAAGGGGTTGATGAATCTAAAGAATATAGGGATACAAGGAGAGCAATGGATATTGTTGGAATAAGTTCTGAGGAGCAGGATGCAATATTTAAAGTTGTTGCTGCAATTTTGCATCTTGGCAACATTGAATTTGCGAAAGGGAAGGAGATAGACTCATCTATGCCCAAAGATGAAAAATCTCGGTTCCATCTACAGACTGCTGCTGAGCTTTTCATGTGTGATGCAAAGGCACTTGAAGATTCTCTTTGCAAACGTGTAATTGTTACTCGTGATGAAACAATTACAAAATGGCTGGATCCGGAAGCTGCTGCACTCAGCCGAGATGCCTTGGCTAAGATTGTGTACACAAGATTGTTTGACTGGTTGGTTGATAAAATTAATAATTCTATTGGTCAAGACCCCGAGTCAAAATCCTTAATTGGCGTGCTGGATATTTATGGTTTTGAGAGTTTCAAGACTAACAGTTTTGAGCAATTTTGTATTAATTTGACCAATGAAAAGCTTCAGCAACATTTTAATCAGCATGTTTTCAAAATGGAGCAAGAAGAATACAAAAAAGAGGAAATTGATTGGAGTTACATTGAATTTGTGGACAATCAAGATATTCTGGATCTCATTGAAAAGAAACCTGGTGGCATTATTGCTCTTCTGGATGAAGCTTGTATGTTTCCTAGATCTACACACGAAACTTTTGCCCAAAAGCTATATCAGACCTTCAAAAATCACAAAAGGTTTAGCAAGCCTAAATTATCACGTAGTGACTTCACAATTTGCCATTATGCAGGAGATGTAACTTATCAAACTGAATTGTTCCTCGACAAGAACAAGGATTATGTTGTTGCAGAGCACCAAGCACTTCTTTATGCTTCCAAATGCCCCTTTGTATCGGGCTTGTTTCCCCCTTCACCCGAAGAATCTTCTAAACAATCAAAGTTCTCTTCAATTGGTTCACGATTTAAGCAACAATTGCAATCTTTACTTGAAACTCTCAGTGCCACTGAGCCACACTACATTCGTTGTGTAAAACCCAATAATCTTCTTAAGCCAGCAATTTTTGAGAATAAAAATGTTCTGCTGCAACTACGTTGTGGGGGAGTTATGGAAGCAATTAGGATAAGCTGTGCTGGGTATCCTACTAGAAAAACCTTTGATGAATTTGTGGATCGATTTAGCCTTCTTGCACCTGAAGCATTGGCTGGAAGTTCTGATGAGGTCACTGCTTGCAAGAGGATTCTAAAGAATGTTGGACTTGAAGGCTATCAGATTGGTAAGACAAAGGTGTTTCTTCGAGCTGGTCAGATGGCAGAACTAGATACCCGCAGAACTGAAATCTTGGGGAGGTCAGCAAGCATTATTCAGAGAAAAGTTCGTTCCTATTTGGCCTGCCAAAGTTTCATCTTGCTTCGTTTGTCTGCTGTGCAGATTCAAGCTGCGTGCAGAGGACAACTTGCACGGCAAGTGTATGAGGGAATGCGGCAGGAGGCTTCTAGTTTAGTGATTCAGAGGTGCTTCCGCATGCATATTGCTTGGAAGGCATACAAAGATCTGTATACCTCTGCTATCTCTATCCAGACTGGTATGCGGGGGATGGCTGCTCATTGTGAGCTACACTTCAGAAGGCAAACTAAAGCAGCAATTGCCATTCAGAGCCACTGCCGGAAATACTTGGCACAACTTCATTTCGCAAAATTAAAGAAGGCAGCAATTACAACGCAATGTGCATGCAGAGGAAAAGTTGCTCGGCGAGAATTGCGAAAGCTCAAGATGGCTGCAAGAGAAACAGGAGCTCTCCAAGCTGCCAAAAGTAAGCTTGAAGAGCAAGTTGAAGACCTTACATTAAGATTGCAGCTGGAAAAACGTTTGCGGGTTGACATCGAAGAAGCAAAAGCACAAGAAAATCAAAGATTACAATCTGCTTTGCAAGAGATGCAACTTCAGTTTAAAGAAACTAAGCTACTTCTTGAAAAGGAGAGGGAGGCTACAAAAAAAGCAGCTGAGAGAGCGGCTGTCATACAGGAAGTTCCAGTTGTTGACAATGCTTTGTTGGAGAAGCTCAGAAGTGAGAATGAGAAACTCAAGAACATGGTGAGTTCGCTGGAAAAGAAAATTGATGAAACGGAAAAAAGGTATGAAGAGGCAAACAAAATTGGTGAAGAAAGGTTGAAGCAAGCTTTGGATGCAGAGTCAAAAGTAATCCATTTGAAGACTGCTATGCAAAGGCTTGAAGAGAAATTCATAGACATGGAATCTGCAAACCATATTCTTCAGAAACAATCTCTATTAAACTCATCTGTGAAAACAATAGCAGAGCACCTGTCTTCCCCATTGGACGAGAAGTTAGAAAATGGTCACCATGCGGCAGAAGAGCAGGAAGCTGTTGATACATTTGTTACACCTGTGAAACAATTTGGTACTGAATCAGACAGTAAATTGAGAAGATCTTACAATGAACGACAACATGAGAGTGTTGATTCACTTGTCAACTGTGTTATGAAAAATATTGGATTCAATCATGGAAAACCCATTGCTGCATTCACCATTTACAAATGTCTTCTCCACTGGAAATCATTTGAAGCTGAAAGAACTAGTGTATTTGATCGCCTCATCCAAATGATTGGTTCCGAAATTGAGAATCAAGACGACAATGATCATATGGCCTATTGGCTGTCAAATACTTCTGCGTTATTGTTTTTACTTGAACAAAGCCTGAAATCTGGGAGTTCAGCAAAAGCTACCCCAGCTAGAAAACTGCCTAATCCAACATCTCTTTTTGGAAGAATGACTATGGGTAAATTGCAGAGTTTTCTTTCATCCCCTTCTTCTGCCAACCTTGCTGCTCCTCCAGCAGATGTTGTACGCAAGGTAGAGGCTAAATACCCTGCTTTGCTTTTCAAGCAGCAGCTCACAGCCTATTTCGAGAAAATATATGGCATCATTCGAGATAATTTGAAGAAGGATTTAACACCGGTTCTTGCATTATGCATCCAGGCACCAAGAATATCAAAGGGAGGGTTACGTTCTAACCGATCCCTTGCTAAGGACTCCCCAGTAGTTCACTGGCAGAGTATTATTGAATCCCTCAATACACTCCTCTGTACACTGAAAGAGAACTTTGTGCCACCAGTTCTTATCCAAAAGATCTTTAGTCAAACATTCTCATATATTAATGTGCAACTCTTCAATAGTCTTCTTCTTCGTCGTGATTGTTGCACATTCAGCAATGGGGAATATGTGAAAGCTGGATTAGCTGAATTAGAGTTGTGGTGCTGCCAAGCAAAGGAAGAGTATGCAGGGTCATCTTGGGATGAGCTTAAGCACATAAGACAGGCTGTTGGATTCTTGGTTATTCATCAGAAGTATAGGATTTCCTATGATGAAATCATCAATGATTTATGCCCCATCTTGAGTGTCCAGCAGCTATATAGAATATGTACACTTTACTGGGATGCTAACTACAATACTCGAAGTGTATCTCCAGATGTCCTTTCAAGCATGAGGATGCTAATGGCTGAGGACTCCAACAATGCTCAGAGTGATTCTTTCTTGTTGGATGACAGTTCCAGCATCCCCTTCTCAGTGGATGATCTCTCTACATCACTGCAAGAGAAGGACTTCTCAGACATGAAACCAGCAGACGAGCTTCTCGAGAATCCAGCCTTCCAGTTCTTAAAGGAGTTGGCGCAGGAAGCTTAG 4566 0.4117 MAAAANPVVGSHIWVEDPDVAWIDGEVLEVKGEEIKVLCTSGKTVVVKASSIYHKDTEVPPSGVDDMRKLAYLHEPGVLDNLRSRYDINEIYTYTGNILIAVNPFIKLPHLYDSHMMAQYKGAAFGELSPHPFAVADAAYRLMINEGISQSILVSGESGAGKTESTKLLMRYLAYMGGRAAAAEGRTVEQKVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDQSGRISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCAAPPEDVKKYKLGDPRMFHYLNQSNCFELEGVDESKEYRDTRRAMDIVGISSEEQDAIFKVVAAILHLGNIEFAKGKEIDSSMPKDEKSRFHLQTAAELFMCDAKALEDSLCKRVIVTRDETITKWLDPEAAALSRDALAKIVYTRLFDWLVDKINNSIGQDPESKSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYKKEEIDWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETFAQKLYQTFKNHKRFSKPKLSRSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLYASKCPFVSGLFPPSPEESSKQSKFSSIGSRFKQQLQSLLETLSATEPHYIRCVKPNNLLKPAIFENKNVLLQLRCGGVMEAIRISCAGYPTRKTFDEFVDRFSLLAPEALAGSSDEVTACKRILKNVGLEGYQIGKTKVFLRAGQMAELDTRRTEILGRSASIIQRKVRSYLACQSFILLRLSAVQIQAACRGQLARQVYEGMRQEASSLVIQRCFRMHIAWKAYKDLYTSAISIQTGMRGMAAHCELHFRRQTKAAIAIQSHCRKYLAQLHFAKLKKAAITTQCACRGKVARRELRKLKMAARETGALQAAKSKLEEQVEDLTLRLQLEKRLRVDIEEAKAQENQRLQSALQEMQLQFKETKLLLEKEREATKKAAERAAVIQEVPVVDNALLEKLRSENEKLKNMVSSLEKKIDETEKRYEEANKIGEERLKQALDAESKVIHLKTAMQRLEEKFIDMESANHILQKQSLLNSSVKTIAEHLSSPLDEKLENGHHAAEEQEAVDTFVTPVKQFGTESDSKLRRSYNERQHESVDSLVNCVMKNIGFNHGKPIAAFTIYKCLLHWKSFEAERTSVFDRLIQMIGSEIENQDDNDHMAYWLSNTSALLFLLEQSLKSGSSAKATPARKLPNPTSLFGRMTMGKLQSFLSSPSSANLAAPPADVVRKVEAKYPALLFKQQLTAYFEKIYGIIRDNLKKDLTPVLALCIQAPRISKGGLRSNRSLAKDSPVVHWQSIIESLNTLLCTLKENFVPPVLIQKIFSQTFSYINVQLFNSLLLRRDCCTFSNGEYVKAGLAELELWCCQAKEEYAGSSWDELKHIRQAVGFLVIHQKYRISYDEIINDLCPILSVQQLYRICTLYWDANYNTRSVSPDVLSSMRMLMAEDSNNAQSDSFLLDDSSSIPFSVDDLSTSLQEKDFSDMKPADELLENPAFQFLKELAQEA* 1522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1419 1521 SMART MYSc_2a 56 734 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gso19g1419 1521 Pfam DIL domain 1338 1441 IPR002710 -
Gso19g1419 1521 PANTHER MYOSIN-14 6 1514 - -
Gso19g1419 1521 ProSiteProfiles IQ motif profile. 759 788 IPR000048 GO:0005515
Gso19g1419 1521 ProSiteProfiles IQ motif profile. 832 861 IPR000048 GO:0005515
Gso19g1419 1521 PANTHER MYOSIN 6 1514 - -
Gso19g1419 1521 Coils Coil 878 951 - -
Gso19g1419 1521 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 57 IPR004009 GO:0003774|GO:0005524|GO:0016459
Gso19g1419 1521 Gene3D - 253 311 - -
Gso19g1419 1521 SMART iq_5 783 805 IPR000048 GO:0005515
Gso19g1419 1521 SMART iq_5 735 757 IPR000048 GO:0005515
Gso19g1419 1521 SMART iq_5 758 780 IPR000048 GO:0005515
Gso19g1419 1521 SMART iq_5 831 853 IPR000048 GO:0005515
Gso19g1419 1521 SMART iq_5 854 876 IPR000048 GO:0005515
Gso19g1419 1521 ProSiteProfiles Myosin motor domain profile. 62 733 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gso19g1419 1521 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 35 786 IPR027417 -
Gso19g1419 1521 Gene3D Myosin VI head, motor domain, U50 subdomain 313 602 - -
Gso19g1419 1521 Gene3D - 667 734 - -
Gso19g1419 1521 SMART DIL_2 1337 1444 IPR002710 -
Gso19g1419 1521 Pfam Myosin N-terminal SH3-like domain 10 52 IPR004009 GO:0003774|GO:0005524|GO:0016459
Gso19g1419 1521 PRINTS Myosin heavy chain signature 92 111 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gso19g1419 1521 PRINTS Myosin heavy chain signature 149 174 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gso19g1419 1521 PRINTS Myosin heavy chain signature 197 224 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gso19g1419 1521 PRINTS Myosin heavy chain signature 430 458 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gso19g1419 1521 PRINTS Myosin heavy chain signature 483 511 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gso19g1419 1521 Gene3D - 786 833 - -
Gso19g1419 1521 Gene3D - 834 883 - -
Gso19g1419 1521 Gene3D - 736 785 - -
Gso19g1419 1521 ProSiteProfiles IQ motif profile. 855 884 IPR000048 GO:0005515
Gso19g1419 1521 Coils Coil 973 1007 - -
Gso19g1419 1521 Coils Coil 1015 1049 - -
Gso19g1419 1521 CDD MYSc_Myo11 76 721 IPR036018 -
Gso19g1419 1521 Pfam IQ calmodulin-binding motif 833 852 IPR000048 GO:0005515
Gso19g1419 1521 Pfam IQ calmodulin-binding motif 857 876 IPR000048 GO:0005515
Gso19g1419 1521 Pfam IQ calmodulin-binding motif 762 779 IPR000048 GO:0005515
Gso19g1419 1521 Gene3D - 440 624 - -
Gso19g1419 1521 Gene3D Kinesin motor domain 65 663 IPR036961 -
Gso19g1419 1521 ProSiteProfiles Dilute domain profile. 1157 1462 IPR002710 -
Gso19g1419 1521 Pfam Myosin head (motor domain) 64 721 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gso19g1419 1521 CDD MyosinXI_CBD 1108 1485 IPR037975 GO:0007015
Gso19g1419 1521 ProSiteProfiles IQ motif profile. 784 813 IPR000048 GO:0005515
Gso19g1419 1521 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 788 884 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1419 Gso-Chr19 43052043 43070332 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1419 1 1514 Myosins gene family AT5G43900 75.526 0.0 2345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1419 K10357 - gmx:100819463 2935.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1419 19 43052043 43070332 Gso3g1427 3 40225275 40242431 GST
Gso19g1419 19 43052043 43070332 Gso10g0360 10 3785004 3803227 PCT
Gso10g0360 10 3785004 3803227 Gso19g1419 19 43052043 43070332 PCT