Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1406 ATGGCCGTCGATGAAATTGAAATATTGTCTTCGACGTTGTTTTCTTCTTCTTCTTCGGGATCGTTTGAGATCCTTTGGAGTGCGATCCTCGGATTGCCTTTGTTGGAACTGGTGGCAATCTGTGCCAACCTGACACTGTTTATTCTCTTTCTCGTCGTTGTTTCGGCGAGGAAGGTGCTTGTGTGTGTATGGGGAGGAGTTAGATTCGGTAAGGAGAACGGAACCGGCAATGCCAGCCCCGGTTGTGTTAGTGTTGATTTGGAAACACGTGACATTCGGATTGAAACGTGGTTCAAGTTGTCGGTGTTGTCTTGTTTCTATGTTCTGTTGGTGCAAGTTTTGGTCTTGGGGTTTGATGGGGTTGCTTTGATTAGAGGAAGGGATTTGGATTTGGATTTGGGTTTGGCTCTTCTTTCTGTGCCTCTTGTGCAGGGTTTAGCTTGGGTTGTGTTGAGCTTCTCGGCTTTGCAATGCAAATTCAAGGCGTGTGAGAGGTTTCCAGTTTTGCTTAGAGTTTGGTTATTTGTGGTGTTCGTTATTTGTTTGTGTGGTTTGTATGTTGATGGAAGGGGGGTTTGGATGGAAGGTTCCAAGCACCTGCGTTCTCATGTTGTGGCGAATTTCGCCGTCACTCCTGCTCTTGCCTTTTTGTGTATTGTGGCAATTAGGGGTGTTACTGGTATAAAGGTTTTTAGGAGTTCTGAGGAGCAACAGCCATTGCTTGTTGATGAGGATCCCGGGTGTCTCAAGGTTACTCCTTATAGTGATGCTGGACTTTTTAGCTTGGCCATTTTGTCTTGGTTGAATCCACTTCTTTCCATTGGGGCAAAAAGGCCGCTTGAGCTTAAGGACATTCCCCTTGTTGCGCCGAAAGACCGATCCAAGACAAATTATAAGGTTTTGAATTCTAATTGGGAGAGGTTGAAGGCTGAAAACCTATCCGGGCAGCCTTCGTTGGCTTGGGCACTTCTCAAATCCTTCTGGAAGGAGGCGGCTTGTAACGCTGTGTTTGCTGGTGTCACTACTCTTGTCTCGTATGTTGGTCCATATATGATAAGTTACTTTGTTGATTACTTGGTTGGCAAAGAGATTTTCCCACATGAGGGGTATGTCCTTGCAGGGGTATTCTTTGTGGCAAAGCTTGTGGAGACCTTTACTACTAGGCAGTGGTATCTTGGGGTGGATATCTTGGGTATGCATGTTAGGTCGGCTCTAACTGCAATGGTATATCGAAAGGGGCTAAGGATATCAAGCTTGGCCAAGCAAAGTCACACGAGCGGGGAGGTTGTTAACTACATGGCTATTGATGTTCAGAGGGTAGGGGACTACTCTTGGTATCTTCATGACATGTGGATGCTTCCTCTGCAGATTGTTCTTGCCCTTGCGATTTTGTATAAGAATGTTGGAATTGCTTCTATTGCAACACTGATTGCTACAATAATTTCCATCGCGGTCACTGTTCCTATTGCCAGGATCCAAGAAAATTATCAAGACAAATTAATGGCTGCTAAGGATGAAAGGATGAGAAAAACATCTGAGTGCCTGAGGAATATGAGGATTCTCAAACTTCAAGCTTGGGAGGATAGATATAGAGTGAAATTGGAGGAAATGCGAGGAGTAGAGTTCAAGTGGCTTCGGAAAGCTCTCTATTCTCAGGCTTTCATAACTTTCATATTCTGGAGCTCCCCTATATTTGTTTCAGCAGTCACTTTTGGTACTTCCATATTGTTGGGTGGTCAGCTGACTGCTGGTGGTGTACTTTCTGCTTTGGCTACTTTCAGGATCCTGCAAGAACCTTTGAGGAATTTTCCGGACTTGGTGTCAACAATGGCTCAGACAAAGGTTTCTCTTGACCGATTATCTGGTTTCCTGCTGGAGGAGGAATTGCAGGAAGATGCAACTATTGTCTTGCCACAAGGCATTACTAACATTGCTATAGAAATTAAGGGTGGTGTCTTCTGTTGGGACCCTTCTTCATCTTCTAGACCTACCCTATCAGGGATAAGTATGAAAGTTGAAAGAAGGATGCGTGTGGCTGTTTGTGGTATGGTTGGTTCAGGGAAATCAAGTTTTCTTTTGTGCATCCTTGGAGAGATTCCTAAAATTTCTGGTGAAGTTAGAGTGTGTGGCTCTTCTGCATATGTCTCCCAATCAGCATGGATACAATCAGGAACTATAGAAGAAAATATCCTCTTTGGAAGCCCAATGGACAAAGCAAAGTACAAGAATGTTCTTCATGCTTGTTCACTGAAAAAGGACCTAGAACTTTTCTCACATGGTGATCTTACAATTATTGGGGATAGAGGTATAAACCTGAGTGGTGGCCAGAAGCAGCGGGTTCAGCTGGCTCGGGCACTCTACCAAGATGCTGATATTTATCTTCTTGATGATCCCTTCAGTGCAGTTGATGCTCACACTGGATCAGACTTGTTTAGGGAGTATATATTGACAGCACTTGCAGATAAAACAGTCATTTATGTGACCCATCAAGTTGAATTTCTTCCTGCTGCTGATTTGATATTGGTTCTCAAAGAAGGATGCATCATACAGTCAGGAAAGTATGACGATCTTTTACAAGCAGGAACAGATTTTAATACTCTGGTTTCAGCTCACAATGAAGCCATAGAGGCCATGGATATCCCTACTCACTCTGAAGATTCAGATGAAAATTTATCCCTGGAGGCATGTGTTATGACCAGTAAGAAATCCATTTGTTCTGCAAATGATATAGACAGTTTGGCAAAGGAAGTGCAAGAGGGATCATCTATTTCAGATCAAAAAGCAATTAAAGAGAAGAAGAAAGCAAAACGATCGAGAAAGAAACAGCTTGTTCAGGAAGAGGAGAGGATTAGAGGTAGAGTCAGCATGAAGGTGTATTTGTCATACATGGCAGCAGCATATAAAGGCTTATTGATTCCACTCATAATCATTGCACAAACATTATTTCAGTTCCTTCAGATTGCTAGCAATTGGTGGATGGCTTGGGCTAATCCTCAAACAGAAGGAGACCTGCCCAAAGTAACTCCCTCAGTTCTTCTTCTTGTTTATATGGCCCTTGCTTTTGGCAGCTCATGGTTTATATTTGTAAGGGCTGTTCTGGTGGCTACGTTTGGTCTTGCAGCTGCACAGAAGCTATTTTTGAAAATGCTTAGAAGTGTTTTCCATGCACCAATGTCTTTCTTTGACTCTACACCAGCTGGAAGGATTTTGAATCGGGTATCAATTGATCAAAGTGTTGTGGATCTTGACATTCCTTTTAGACTTGGTGGGTTTGCTTCAACAACAATACAGCTTATTGGTATTGTTGGTGTAATGACAGAAGTTACGTGGCAAGTTTTGCTCTTAGTTGTCCCAATGGCTGTTGCTTGTTTGTGGATGCAGAAATACTACATGGCTTCCTCAAGGGAACTGGTTCGAATTGTTAGCATCCAGAAGTCTCCAATTATACATCTTTTTGGTGAATCTATTGCTGGAGCATCCACCATCAGGGGTTTTGGACAAGAAAAAAGGTTCATGAAGCGAAACCTCTATCTTCTTGATTGCTTTGCACGACCATTCTTCTGCAGTCTTTCTGCAATTGAGTGGCTCTGCCTGCGGATGGAGTTACTGTCAACCTTTGTATTTGCTTTCTGTATGGTATTACTTGTGAGTTTTCCTCGTGGAAGTATCGACCCCAGCATGGCTGGACTTGCTGTGACATATGGCCTGAATTTAAATGCACGTCTATCACGGTGGATACTCAGCTTTTGCAAACTTGAAAATAAAATTATATCTATTGAGAGAATTTATCAGTACAGCCAAATTCCTAGTGAAGCACCCACAGTTATTGAAGATTATCGCCCTCCATCCTCATGGCCTGAAAATGGGACAATTGAAATAATTGATTTGAAGATTCGTTACAAGGAGAATCTTCCTTTGGTGCTTTATGGAGTAACATGCACATTTCCTGGTGGAAAGAAGATTGGAATAGTAGGACGTACTGGCAGTGGAAAATCTACTTTAATTCAGGCGTTATTTCGATTGATTGAACCAACAAGTGGGAGTATCCTTATAGACAACATTAATATTTCAGAGATTGGCCTTCATGACCTTCGAAGCCATCTCAGTATCATACCACAAGATCCAACCTTATTTGAAGGTACCATTCGAGGCAATCTTGATCCTCTGGATGAGCACTCAGATAAAGAGATTTGGGAGGCACTTGATAAGTCTCAGCTTGGAGAGGTTATCCGTGAGAAAGGACAACAGCTTGATACGCCAGTTCTAGAAAATGGAGATAATTGGAGTGTAGGACAGCGACAACTTGTTGCTCTGGGCCGAGCTCTGCTGCAGCAGTCAAGAATACTTGTACTAGATGAAGCAACAGCATCAGTTGATACCGCCACAGATAATCTTATACAGAAGATTATCCGAAGTGAGTTCAAAGAATGCACTGTTTGCACCATTGCACATCGAATACCTACTGTCATTGACAGTGATCTAGTTCTTGTGCTCAGTGATGGTCGAGTTGCAGAGTTCAACACTCCTTCAAGACTATTAGAGGATAAGTCATCCATGTTTCTGAAGCTGGTGACTGAGTACTCATCACGTTCAAGTGGCATACCAGACTTTTAG 4614 0.4283 MAVDEIEILSSTLFSSSSSGSFEILWSAILGLPLLELVAICANLTLFILFLVVVSARKVLVCVWGGVRFGKENGTGNASPGCVSVDLETRDIRIETWFKLSVLSCFYVLLVQVLVLGFDGVALIRGRDLDLDLGLALLSVPLVQGLAWVVLSFSALQCKFKACERFPVLLRVWLFVVFVICLCGLYVDGRGVWMEGSKHLRSHVVANFAVTPALAFLCIVAIRGVTGIKVFRSSEEQQPLLVDEDPGCLKVTPYSDAGLFSLAILSWLNPLLSIGAKRPLELKDIPLVAPKDRSKTNYKVLNSNWERLKAENLSGQPSLAWALLKSFWKEAACNAVFAGVTTLVSYVGPYMISYFVDYLVGKEIFPHEGYVLAGVFFVAKLVETFTTRQWYLGVDILGMHVRSALTAMVYRKGLRISSLAKQSHTSGEVVNYMAIDVQRVGDYSWYLHDMWMLPLQIVLALAILYKNVGIASIATLIATIISIAVTVPIARIQENYQDKLMAAKDERMRKTSECLRNMRILKLQAWEDRYRVKLEEMRGVEFKWLRKALYSQAFITFIFWSSPIFVSAVTFGTSILLGGQLTAGGVLSALATFRILQEPLRNFPDLVSTMAQTKVSLDRLSGFLLEEELQEDATIVLPQGITNIAIEIKGGVFCWDPSSSSRPTLSGISMKVERRMRVAVCGMVGSGKSSFLLCILGEIPKISGEVRVCGSSAYVSQSAWIQSGTIEENILFGSPMDKAKYKNVLHACSLKKDLELFSHGDLTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSDLFREYILTALADKTVIYVTHQVEFLPAADLILVLKEGCIIQSGKYDDLLQAGTDFNTLVSAHNEAIEAMDIPTHSEDSDENLSLEACVMTSKKSICSANDIDSLAKEVQEGSSISDQKAIKEKKKAKRSRKKQLVQEEERIRGRVSMKVYLSYMAAAYKGLLIPLIIIAQTLFQFLQIASNWWMAWANPQTEGDLPKVTPSVLLLVYMALAFGSSWFIFVRAVLVATFGLAAAQKLFLKMLRSVFHAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLIGIVGVMTEVTWQVLLLVVPMAVACLWMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLYLLDCFARPFFCSLSAIEWLCLRMELLSTFVFAFCMVLLVSFPRGSIDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIISIERIYQYSQIPSEAPTVIEDYRPPSSWPENGTIEIIDLKIRYKENLPLVLYGVTCTFPGGKKIGIVGRTGSGKSTLIQALFRLIEPTSGSILIDNINISEIGLHDLRSHLSIIPQDPTLFEGTIRGNLDPLDEHSDKEIWEALDKSQLGEVIREKGQQLDTPVLENGDNWSVGQRQLVALGRALLQQSRILVLDEATASVDTATDNLIQKIIRSEFKECTVCTIAHRIPTVIDSDLVLVLSDGRVAEFNTPSRLLEDKSSMFLKLVTEYSSRSSGIPDF* 1538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1406 1537 CDD ABCC_MRP_domain1 646 846 - -
Gso19g1406 1537 CDD ABC_6TM_ABCC_D1 333 620 IPR044746 GO:0140359
Gso19g1406 1537 SMART AAA_5 1317 1502 IPR003593 -
Gso19g1406 1537 SMART AAA_5 674 855 IPR003593 -
Gso19g1406 1537 ProSitePatterns ABC transporters family signature. 772 786 IPR017871 GO:0005524
Gso19g1406 1537 PANTHER MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN 82 1537 - -
Gso19g1406 1537 CDD ABCC_MRP_domain2 1289 1509 - -
Gso19g1406 1537 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 642 869 IPR027417 -
Gso19g1406 1537 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 82 1537 - -
Gso19g1406 1537 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1291 1525 IPR003439 GO:0005524
Gso19g1406 1537 Gene3D - 629 891 IPR027417 -
Gso19g1406 1537 Pfam ABC transporter 1310 1456 IPR003439 GO:0005524
Gso19g1406 1537 Pfam ABC transporter 665 799 IPR003439 GO:0005524
Gso19g1406 1537 Coils Coil 493 513 - -
Gso19g1406 1537 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 646 870 IPR003439 GO:0005524
Gso19g1406 1537 SUPERFAMILY ABC transporter transmembrane region 321 626 IPR036640 GO:0005524|GO:0016021
Gso19g1406 1537 Gene3D - 1274 1527 IPR027417 -
Gso19g1406 1537 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 974 1244 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso19g1406 1537 Gene3D ABC transporter type 1, transmembrane domain 309 628 IPR036640 GO:0005524|GO:0016021
Gso19g1406 1537 Gene3D ABC transporter type 1, transmembrane domain 933 1272 IPR036640 GO:0005524|GO:0016021
Gso19g1406 1537 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 335 612 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso19g1406 1537 Pfam ABC transporter transmembrane region 336 600 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso19g1406 1537 Pfam ABC transporter transmembrane region 974 1216 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso19g1406 1537 SUPERFAMILY ABC transporter transmembrane region 971 1271 IPR036640 GO:0005524|GO:0016021
Gso19g1406 1537 CDD ABC_6TM_ABCC_D2 972 1266 IPR044726 GO:0140359
Gso19g1406 1537 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1283 1521 IPR027417 -
Gso19g1406 1537 Coils Coil 929 949 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1406 Gso-Chr19 42874581 42883287 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1406 656 863 Calmodulin-binding Proteins AT2G36910 31.278 2.02e-18 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1406 - - gmx:100814850 2929.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1406 19 42874581 42883287 Gso3g1412 3 40058442 40066812 GST
Gso19g1406 19 42874581 42883287 Gso13g0968 13 24045506 24054534 PCT
Gso13g0968 13 24045506 24054534 Gso19g1406 19 42874581 42883287 PCT