Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1403 ATGAAGAACAAGATGCAAATGAAAATCCAGATTTTCATTTTCTGGTACATTGGTTGTTTCTCTTATGGTTTTGCCGCTGCTGTCACAAATGAAGTATCAGCTTTGCTTTCTATAAAAGCAGGTCTCGTTGATCCGTTGAACGCCCTTCAGGATTGGAAACTGCATGGCAAAGAACCAGGACAGGATGCATCTCATTGTAACTGGACCGGCATCAAATGCAACTCAGCTGGAGCTGTAGAGAAGCTCGATCTCTCCCACAAGAATCTCAGTGGCAGAGTATCCAATGATATACAAAGACTTGAGAGTCTTACTTCTCTCAACTTGTGTTGCAATGCCTTTTCAACACCATTGCCAAAATCCATAGCCAATCTCACCACACTCAACAGCCTTGATGTAAGCCAAAATCTCTTCATTGGTGACTTTCCATTAGGCCTTGGAAGGGCATTGAGACTTGTGGCCTTAAATGCATCCAGCAATGAGTTCTCTGGTTCTCTTCCTGAGGACCTTGCAAATGCCTCTTGCTTGGAGATGCTTGATCTCAGAGGCAGCTTCTTTGTAGGGTCAGTTCCAAAATCATTCAGTAACTTGCATAAGTTGAAGTTCCTTGGTCTATCTGGCAATAATCTCACTGGTAAAATTCCTGGCGAGCTGGGACAACTTTCATCACTGGAGCATATGATCCTTGGATATAATGAATTTGAAGGTGGCATTCCTGATGAATTTGGAAACCTCACCAATCTTAAGTATCTTGATTTAGCAGTAGCCAATCTTGGTGGTGAGATTCCAGGCGGATTGGGAGAGCTCAAGTTGTTGAATACAGTTTTCTTATACAACAACAACTTTGACGGCAGAATTCCACCAGCAATTGGCAACATGACCTCTTTGCAGTTGCTGGATCTTTCTGATAACATGTTGTCAGGAAAAATTCCATCTGAAATAAGTCAGCTGAAGAATTTGAAACTTCTCAACTTCATGGGCAACAAGCTGTCTGGTCCTGTGCCTTCTGGCTTTGGAGATTTGCAACAACTGGAGGTACTTGAGTTATGGAACAATTCCTTGTCAGGGCCATTGCCTAGTAACCTTGGCAAGAATTCACCATTGCAATGGTTGGATGTATCATCCAATTCACTCTCTGGAGAGATTCCAGAAACTCTTTGCAGCCAGGGCAATCTCACCAAGCTTATACTATTCAACAATGCATTCACTGGTCCAATTCCATCAAGCCTATCAATGTGTCCTTCACTAGTTCGTGTTCGAATTCAGAACAATTTTCTTTCTGGGACGGTTCCTGTGGGTCTTGGGAAGCTTGGGAAGCTTCAAAGGTTAGAGTTGGCTAACAATAGTCTTTCTGGTGGAATTCCAGATGACATTTCCTCTTCCACATCCCTTTCCTTTATTGATCTCTCAAGAAACAAACTTCATTCTTCGCTTCCTTCCACTGTCCTTTCCATTCCAGACTTGCAAGCTTTCATGGTCTCCAACAACAACTTGGAAGGTGAAATCCCAGACCAATTTCAGGACTGTCCATCACTTGCAGTTCTTGATCTCTCATCAAATCATCTATCTGGAAGCATTCCAGCAAGCATTGCTTCATGTCAGAAGTTGGTAAATTTGAACCTCCAAAACAACCAATTGACTAGTGAAATCCCAAAAGCATTAGCTAAAATGCCTACATTGGCCATGCTTGATCTTTCCAACAATTCTCTGACAGGTCAAATACCTGAAAGCTTTGGAGTTTCTCCAGCTCTGGAAGCACTCAATGTCTCATACAATAAGCTAGAAGGTCCAGTCCCAGCAAACGGAATACTAAGAACTATAAACCCAAATGATCTTCTCGGTAATGCTGGCCTATGTGGTGGTATCCTCCCTCCATGTGACCAAAACTCTGCATACTCTTCAAGACACGGAAGCTTGCGTGCAAAGCACATTATTACAGCATGGATCACTGGAATATCTTCAATCCTAGTCATCGGAATTGCAATTTTGGTAGCAAGATCTTTGTACATAAGGTGGTACACCGACGGGTTTTGCTTCCAAGAAAGATTTTATAAGGGTAGCAAAGGGTGGCCCTGGAGATTGATGGCTTTTCAGAGGCTTGGTTTTACAAGTACTGACATTCTAGCTTGCGTCAAGGAAACCAATGTGATTGGCATGGGAGCCACCGGGGTTGTTTACAAGGCCGAGGTACCGCAATCAAATACAGTTGTGGCAGTGAAAAAATTGTGGAGAACAGGAACTGATATTGAAGTAGGAAGCAGTGATGACCTTGTTGGAGAGGTGAATGTTTTAGGGAGGCTAAGGCATAGGAACATTGTCAGATTATTAGGATTTCTTCACAATGACATCGATGTCATGATAGTTTATGAATTCATGCACAATGGCAACCTGGGAGAAGCCTTGCATGGTAGACAAGCAACAAGACTACTTGTAGACTGGGTTTCACGGTACAACATAGCTCTAGGAGTTGCACAAGGACTTGCTTATCTCCATCATGATTGTCATCCACCCGTTATCCATCGAGACATCAAGACAAATAACATATTGCTTGATGCAAATCTTGAGGCAAGGATAGCAGATTTTGGTTTAGCCAAGATGATGATCCGGAAGAATGAAACAGTCTCCATGGTTGCTGGATCCTATGGCTACATTGCCCCTGAATATGGATATGCCTTGAAGGTGGATGAAAAGATTGATGTTTACAGTTATGGAGTAGTTTTGTTGGAGCTTCTCACAGGAAAGAGGCCATTAGATTCAGACTTTGGAGAGTCAATAGACATAGTAGAGTGGATTAGAATGAAGATTAGAGACAACAAATCTCTAGAAGAAGCATTAGACCCCAGCGTAGGAAACAACAGGCATGTTCTAGAAGAAATGCTTTTAGTTCTAAGAATAGCAATTCTTTGCACTGCCAAGCTCCCAAAGGACAGACCAACCATGAGGGATGTCGTAATGATGCTTGGAGAGGCAAAGCCTCGGCGAAAGAGCAGTGGCAATAGCAACGATGTAGCTAACAACAAAGAGACACCAGTTTTTAGCACGTCACCAGTTAATGATAATAACCTTGTGTAG 3069 0.4265 MKNKMQMKIQIFIFWYIGCFSYGFAAAVTNEVSALLSIKAGLVDPLNALQDWKLHGKEPGQDASHCNWTGIKCNSAGAVEKLDLSHKNLSGRVSNDIQRLESLTSLNLCCNAFSTPLPKSIANLTTLNSLDVSQNLFIGDFPLGLGRALRLVALNASSNEFSGSLPEDLANASCLEMLDLRGSFFVGSVPKSFSNLHKLKFLGLSGNNLTGKIPGELGQLSSLEHMILGYNEFEGGIPDEFGNLTNLKYLDLAVANLGGEIPGGLGELKLLNTVFLYNNNFDGRIPPAIGNMTSLQLLDLSDNMLSGKIPSEISQLKNLKLLNFMGNKLSGPVPSGFGDLQQLEVLELWNNSLSGPLPSNLGKNSPLQWLDVSSNSLSGEIPETLCSQGNLTKLILFNNAFTGPIPSSLSMCPSLVRVRIQNNFLSGTVPVGLGKLGKLQRLELANNSLSGGIPDDISSSTSLSFIDLSRNKLHSSLPSTVLSIPDLQAFMVSNNNLEGEIPDQFQDCPSLAVLDLSSNHLSGSIPASIASCQKLVNLNLQNNQLTSEIPKALAKMPTLAMLDLSNNSLTGQIPESFGVSPALEALNVSYNKLEGPVPANGILRTINPNDLLGNAGLCGGILPPCDQNSAYSSRHGSLRAKHIITAWITGISSILVIGIAILVARSLYIRWYTDGFCFQERFYKGSKGWPWRLMAFQRLGFTSTDILACVKETNVIGMGATGVVYKAEVPQSNTVVAVKKLWRTGTDIEVGSSDDLVGEVNVLGRLRHRNIVRLLGFLHNDIDVMIVYEFMHNGNLGEALHGRQATRLLVDWVSRYNIALGVAQGLAYLHHDCHPPVIHRDIKTNNILLDANLEARIADFGLAKMMIRKNETVSMVAGSYGYIAPEYGYALKVDEKIDVYSYGVVLLELLTGKRPLDSDFGESIDIVEWIRMKIRDNKSLEEALDPSVGNNRHVLEEMLLVLRIAILCTAKLPKDRPTMRDVVMMLGEAKPRRKSSGNSNDVANNKETPVFSTSPVNDNNLV* 1023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1403 1022 Gene3D Ribonuclease Inhibitor 283 389 IPR032675 -
Gso19g1403 1022 ProSiteProfiles Protein kinase domain profile. 710 993 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso19g1403 1022 SMART serkin_6 710 986 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso19g1403 1022 Pfam Protein kinase domain 712 983 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso19g1403 1022 SUPERFAMILY RNI-like 276 595 - -
Gso19g1403 1022 PANTHER UNNAMED PRODUCT 11 998 - -
Gso19g1403 1022 ProSitePatterns Protein kinases ATP-binding region signature. 716 740 IPR017441 GO:0005524
Gso19g1403 1022 SUPERFAMILY L domain-like 63 355 - -
Gso19g1403 1022 Gene3D Ribonuclease Inhibitor 390 629 IPR032675 -
Gso19g1403 1022 PRINTS Leucine-rich repeat signature 511 524 - -
Gso19g1403 1022 PRINTS Leucine-rich repeat signature 556 569 - -
Gso19g1403 1022 MobiDBLite consensus disorder prediction 996 1022 - -
Gso19g1403 1022 Gene3D Phosphorylase Kinase; domain 1 710 794 - -
Gso19g1403 1022 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 11 998 - -
Gso19g1403 1022 Pfam Leucine rich repeat 534 593 IPR001611 GO:0005515
Gso19g1403 1022 Pfam Leucine rich repeat 175 232 IPR001611 GO:0005515
Gso19g1403 1022 SUPERFAMILY Protein kinase-like (PK-like) 707 986 IPR011009 -
Gso19g1403 1022 Gene3D Ribonuclease Inhibitor 27 181 IPR032675 -
Gso19g1403 1022 MobiDBLite consensus disorder prediction 987 1022 - -
Gso19g1403 1022 SMART LRR_typ_2 340 364 IPR003591 -
Gso19g1403 1022 SMART LRR_typ_2 244 268 IPR003591 -
Gso19g1403 1022 SMART LRR_typ_2 292 316 IPR003591 -
Gso19g1403 1022 SMART LRR_typ_2 556 580 IPR003591 -
Gso19g1403 1022 SMART LRR_typ_2 436 460 IPR003591 -
Gso19g1403 1022 SMART LRR_typ_2 508 532 IPR003591 -
Gso19g1403 1022 SMART LRR_typ_2 196 220 IPR003591 -
Gso19g1403 1022 SMART LRR_typ_2 100 124 IPR003591 -
Gso19g1403 1022 Gene3D Transferase(Phosphotransferase) domain 1 795 1011 - -
Gso19g1403 1022 Pfam Leucine rich repeat N-terminal domain 30 74 IPR013210 -
Gso19g1403 1022 Gene3D Ribonuclease Inhibitor 182 282 IPR032675 -
Gso19g1403 1022 ProSitePatterns Serine/Threonine protein kinases active-site signature. 837 849 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1403 Gso-Chr19 42848379 42852290 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1403 11 1016 Receptor kinase-like Gene Family AT1G08590 59.259 0.0 1159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gso19g1403 Pkinase 6.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1403 - - gmx:100811284 1988.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1403 19 42848379 42852290 Gso3g1409 3 40034635 40038407 GST