Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1402 ATGAGTCTCAAGTCTAAAGAGTCTTGTTCACCACGCCACTCTTCTTCTTGTTGTAGATATTCCCTCACTTCACAACTTGAGACAAGAGCAGAGAAGCCGCTTCAATGTCTAAAGATGACAACTCTTCTTCTCAGGATTCTTCATCTGACCTTGAATTTTCTCTCTCCCTATGCCCCCGCTAATTCCTCCTTCACTTCTCTTCCCATTACCGCTCCCAGTCAAGTTGTTGGATGGCCTCCCCTTGGAGCATATAGAATGAACAGCTATAATAGCCATGCAAAATCACCAGCCACAGAAGTATTCAATTCTACACTTGACAAAAGAGCAAGCAATAGTGCTGGGGTTAGGAAGAGTGCAGATGGTGGCAGTGATAGTAGCAACATTATTTCCAAAGAAAAAGGAAACCTCAGGACTTCCCTGTTTGTGAAAGTAAAAATGGACGGGATACCAATCGGAAGGAAGGTTGATTTGGGTGCTCACGATTCTTATGAAACCTTAGCTCAAACCTTGGAGGATATGTTTGATGAATCAACTACAGTCCTCACTCACAAAGTAGGATCAAATGGAGAAGATCATGGTACTGAAGTTGGAACAGATGGGCATTCAAAATTGCTGGATGGTTCTTCTGACTTTGTGCTCACTTATGAAGACAAGGAAGGAGACTGGGTGCTTGTTGGAGATGTTCCTTGGTGA 693 0.4329 MSLKSKESCSPRHSSSCCRYSLTSQLETRAEKPLQCLKMTTLLLRILHLTLNFLSPYAPANSSFTSLPITAPSQVVGWPPLGAYRMNSYNSHAKSPATEVFNSTLDKRASNSAGVRKSADGGSDSSNIISKEKGNLRTSLFVKVKMDGIPIGRKVDLGAHDSYETLAQTLEDMFDESTTVLTHKVGSNGEDHGTEVGTDGHSKLLDGSSDFVLTYEDKEGDWVLVGDVPW* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1402 230 MobiDBLite consensus disorder prediction 111 130 - -
Gso19g1402 230 ProSiteProfiles PB1 domain profile. 139 230 IPR000270 GO:0005515
Gso19g1402 230 SUPERFAMILY CAD & PB1 domains 135 230 - -
Gso19g1402 230 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 66 230 IPR003311 GO:0005634|GO:0006355
Gso19g1402 230 Pfam AUX/IAA family 69 230 IPR033389 -
Gso19g1402 230 Gene3D - 134 230 - -
Gso19g1402 230 PANTHER AUXIN-RESPONSIVE PROTEIN IAA11 66 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1402 Gso-Chr19 42841740 42846467 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1402 60 230 B3 DNA Binding Superfamily AT3G61830 28.488 3.64e-09 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Gso19g1402 AUX_IAA 2.3e-43 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1402 K14484 - gmx:100813788 374.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1402 19 42841740 42846467 Gso10g0346 10 3665711 3669669 PCT
Gso10g0346 10 3665711 3669669 Gso19g1402 19 42841740 42846467 PCT