Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1396 ATGGCGCCCAATCCAAGAGTGGTAGCGGCCTTTATGGCAATGTCGAATCTCGGGATTCATGAATCAAAAGTTAAACCAGTGTTGAAGAAACTGCTTAAATTGTATGATAAGAACTGGGCACTCATTGAAGAAGAGAGTTATAGGGCTCTGGCTGATGCTATATTTGAGGAGGAAGAAAATAAGGTGAACGAGCCAGACCAGAATATTAAAAACAAGGACGGAGTAGTGGACGATGTAGAAGCTCATACGCATGAGGAACCTGTGCGGCCTTTGAAGAGGTTGCGTTTGAGAGGCCAAGAGGGTCAATCTTTGCGCCCTCTGACTAGCAGTGGCCCCAGCTCAGCTGCATTTCCATTGAAAATGCCTAAATTAGAAGACGGGACAGTGCCTGAGAGTAGTTCCAGACTGCAGCCTCAAAGCCTGGCTGCATTATCTGATGGAAATGCAAGGATTGGTGCTCATCATGTTCCCCCACAAGATGCTGTTGTCGACAAGGGAAAGAAACCTATATCACCTCAAGTTACTCCCAGAAGGAGAAGGTCCCTTTCTGAACCACTTAAAGAGTCAACAGTTGAAGGCCGAGCTGCTCTGTTGGCAAATAACAAAATGCCTCATCCATTTATTTTGATCAAACCCAAGGATGAGCCTGTTGATGATATACCAGATTATGAGATTCCCCTTGCAGTGATTCCTCCTGTTGAAAAGCAAGATGTCCATGACACTGTTGTATCACAATGCAGAGATGAAGACGTTGAACATGAAGATGTTTTTCCTTCCTCAAATGAAGAAGCAACTTCTAATGTATATGTAGCTTTGTCATCTATGGGAGAGGAACAATCTGTAAAGATAACACAAACTGATGATGTTTCAAAGGAATCTGAGACCAATGACTCATCAATTGTCAGAGGAAATAAAGATTCAGTCATTGCAAATGGGTCAATCAGTGTTAAGTCTTCTTCGGCCGTGGCTGAACTTCAAGTTCCTAGTTCTATACCCAGCCCGAGTGATCCGGATGATGCTGTACTGGCTCCCAAGAAGGTCGCAATGAATGGTTTCTTACAAAGTGATGGTGGAAAGGAGCTGGAGGATCCTATATCCCCAAATTCATGTACTTTAGTGGTTGTTCAAAAACATCAGCTTACAACTGATGATGTAAGGGCAGTTCATGATGTTAATGACCTAACAAAGGGAGAAGAAAGAGTGAAAATTTCATGGGTGAATAACACCACTAATGATTTCCCACCACTCTTTCACTACATACCCCGAAACCTTGTGTTCCGAGATGCTTATGTTAATATTTCTCTATCTCGTATTGGGAATGAGGATTGTTGTTCAACTTGTATGGGCAATTGTGTATTGTCATCTAATCCATGTTCTTGTACAAATAAAACTGGGGGTGAATTTGCTTACACTGCAAAAGGCCTACTAAAGGAAGAGTTCTTGGACGAGTGTATTGCCCTCAGCCATGATCCTCAAAATTATTTCTATTGCAAAGCATGTCCCCTTGAAAGATCAAAGAATGATGATTGTTTAGAACCATGTAAAGGACACTTAAAGAGGAAGTTTATTAAAGAGTGCTGGAGCAAATGTGGCTGTGGGAAACATTGTGGCAATCGGGTTGTCCAGCGTGGGATAACTTGCAAGTTGCAGGTGTTTTTGACTTCAGATGGAAAAGGGTGGGGTCTTCGTACCTTAGAAGATCTTCCAAAAGGCGCATTTGTATGTGAGTTTGTTGGGGAAATTTTGACCCTCAAAGAGTTGCACGAGAGGAACCTGAAATATCCCAAAAATGGGAAATATACATACCCAATTTTATTGGATGCAGATTGGGGTTCAGGAACTGTGAAGGATAGAGAAGCTCTTTGCTTATATGCTGCATCATATGGAAATGCTGCTAGATTTATTAATCACAGATGTTTGGATGCAAACTTGGTTGAGATCCCAGTTGAAGTTGAGGGCCCAACTCATCACTACTATCATTTTGCCTTCTTCACATCCAGAAAAGTAGCAGCACAGGAAGAGCTCACTTGGGATTATGGCATCAACTTTGATGAACATGATGATCAGCCAATTGAGCTGTTCCAGTGCAGATGTAGCAGTAAATTCTGTAGGAATATTAAGCGATTAAATAGATCCATGAGATCGTCAAGTTCATGA 2157 0.42 MAPNPRVVAAFMAMSNLGIHESKVKPVLKKLLKLYDKNWALIEEESYRALADAIFEEEENKVNEPDQNIKNKDGVVDDVEAHTHEEPVRPLKRLRLRGQEGQSLRPLTSSGPSSAAFPLKMPKLEDGTVPESSSRLQPQSLAALSDGNARIGAHHVPPQDAVVDKGKKPISPQVTPRRRRSLSEPLKESTVEGRAALLANNKMPHPFILIKPKDEPVDDIPDYEIPLAVIPPVEKQDVHDTVVSQCRDEDVEHEDVFPSSNEEATSNVYVALSSMGEEQSVKITQTDDVSKESETNDSSIVRGNKDSVIANGSISVKSSSAVAELQVPSSIPSPSDPDDAVLAPKKVAMNGFLQSDGGKELEDPISPNSCTLVVVQKHQLTTDDVRAVHDVNDLTKGEERVKISWVNNTTNDFPPLFHYIPRNLVFRDAYVNISLSRIGNEDCCSTCMGNCVLSSNPCSCTNKTGGEFAYTAKGLLKEEFLDECIALSHDPQNYFYCKACPLERSKNDDCLEPCKGHLKRKFIKECWSKCGCGKHCGNRVVQRGITCKLQVFLTSDGKGWGLRTLEDLPKGAFVCEFVGEILTLKELHERNLKYPKNGKYTYPILLDADWGSGTVKDREALCLYAASYGNAARFINHRCLDANLVEIPVEVEGPTHHYYHFAFFTSRKVAAQEELTWDYGINFDEHDDQPIELFQCRCSSKFCRNIKRLNRSMRSSSS* 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1396 718 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 718 - -
Gso19g1396 718 SMART set_7 547 686 IPR001214 GO:0005515
Gso19g1396 718 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 714 IPR025776 -
Gso19g1396 718 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR2-LIKE PROTEIN 1 718 - -
Gso19g1396 718 MobiDBLite consensus disorder prediction 284 299 - -
Gso19g1396 718 SUPERFAMILY SET domain 386 686 IPR046341 -
Gso19g1396 718 Pfam SET domain 559 680 IPR001214 GO:0005515
Gso19g1396 718 MobiDBLite consensus disorder prediction 280 299 - -
Gso19g1396 718 Pfam Ubiquitin-binding WIYLD domain 6 60 IPR018848 GO:0018024
Gso19g1396 718 MobiDBLite consensus disorder prediction 81 99 - -
Gso19g1396 718 MobiDBLite consensus disorder prediction 150 188 - -
Gso19g1396 718 Pfam Pre-SET motif 395 539 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Gso19g1396 718 MobiDBLite consensus disorder prediction 81 138 - -
Gso19g1396 718 Gene3D SET domain 371 690 IPR046341 -
Gso19g1396 718 ProSiteProfiles SET domain profile. 547 680 IPR001214 GO:0005515
Gso19g1396 718 Gene3D - 1 60 IPR043017 -
Gso19g1396 718 ProSiteProfiles Pre-SET domain profile. 443 544 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Gso19g1396 718 CDD SET_SETDB-like 415 680 - -
Gso19g1396 718 SMART preset_2 391 531 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1396 Gso-Chr19 42790518 42799390 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1396 523 706 C2H2 Transcription Factor Family AT2G23740 38.095 1.54e-28 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gso19g1396 Pre-SET 5.9e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1396 - - gmx:100809678 1448.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1396 19 42790518 42799390 Gso3g1403 3 39974321 39981955 GST
Gso10g0343 10 3642874 3650219 Gso19g1396 19 42790518 42799390 PCT