Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1393 ATGGAAGCACGTTCTGCTTTCTCTATTGACAGATCAAATGCTAAGCAACTCAATAACATGGGGATGTCTGAAGCATTTCCCTCATCATTGCCTGCCCTTCCATCGCCTCTAGAAGAGACATACCCTAAATTATCTGATTCTAAACCAGTTTTTATGGAAAAAGAGCTTAAAACAAAACCTTATACACATTCAAGTCATTTAACTTCCAGCGGAGCAGTTGGGCATATGTTTTCATCTTCTCCTGGATATTCAACTGATCTTCATCACTCATCCTTTTCATCTCATGAAAAACAACCTAGAAATACTCATTTTATTTCACAGTCATTAAGTAACATGGCTTCATTGCCATTATCTTATTCTTCAAATAGTGAACCGATACCTTCTACAACATCAACCCCTTATTCCAATGGAAACAGTGTTTCCTGGCATACAGATTCCTTGCCTAGCTTTCTCGATTTCCCTGCCAATACCTCCATTGGTAATAGTCAAGTAGAAAGCAGTGACTGCAATATCATGGCAACTGAAGAGTATTCTAAGCGAAATGATTGGCAGGAGTGGGCTGACCAATTAATCAGTGATGTTGATCCTTTGACTTCTAATTGGAATGATCTTCTTGCTGACAACATTCAAGATCTTGAACCAAAGGTCGCAAAATCATCTTCTCAACTTCCAATAGGACACCAATCCCAAAGCCATCAACAACTTCCTGCTTCATCTGGAGAAAATCGTGTTGGTGTTGCCCCAACTTCCTCAACAAATTCTGCACCTGCCAAGCCACGGATGCGCTGGACACCTGAGCTTCATGAGGCATTTGTGGAGGCTGTCAACCAACTTGGTGGGAGTGAAAGAGCTACCCCTAAAGGTGTGCTGAAGCTCATGAAAGTTGATGGATTAACTATATACCATGTTAAAAGCCACCTACAGAAGTACAGGACAGCTAGATATAGACCTGAGTCATCTGAAGGAGCTGCAGAGAAAAAACTAAGTCCAATTGAAGAGATGTCATCTCTGGATTTGAAAACTGGTATTGAGATCACTGAAGCTCTGAGGCTGCAGATGGAGGTTCAGAAGCGGTTGCATGAACAGCTTGAGATTCAAAGAAATCTACAGTTGCGAATAGAAGAACAAGGAAGGTACCTTCAAATGATGTTTGAGAAGCAGTGCAAACCTGGCATTGAAACATTTAAGGCATCATCGTCTGCCATCGAAAGTCAATCTGGAGTGTCTTCTGATGCCATCAAAGATTCTCCAGCCAAAACTGAATCAGAAACCATCAAGGTGGACCATTGCAAGTCAGGAGCTGATCAGGCTAATGGCATTACCACAGTTGAGGAAAGCGCATTGGAAGTGGGTGAGAAGCAGGATGCTCCTGAAAGTCAAGCTTCTGAGAATCCTGAGCAACATGCTAGTGAAGATAGTGCTAAAGCCTCAAAGCGTCCAAGGACAGAGGAGTAA 1455 0.4227 MEARSAFSIDRSNAKQLNNMGMSEAFPSSLPALPSPLEETYPKLSDSKPVFMEKELKTKPYTHSSHLTSSGAVGHMFSSSPGYSTDLHHSSFSSHEKQPRNTHFISQSLSNMASLPLSYSSNSEPIPSTTSTPYSNGNSVSWHTDSLPSFLDFPANTSIGNSQVESSDCNIMATEEYSKRNDWQEWADQLISDVDPLTSNWNDLLADNIQDLEPKVAKSSSQLPIGHQSQSHQQLPASSGENRVGVAPTSSTNSAPAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVDGLTIYHVKSHLQKYRTARYRPESSEGAAEKKLSPIEEMSSLDLKTGIEITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGRYLQMMFEKQCKPGIETFKASSSAIESQSGVSSDAIKDSPAKTESETIKVDHCKSGADQANGITTVEESALEVGEKQDAPESQASENPEQHASEDSAKASKRPRTEE* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1393 484 MobiDBLite consensus disorder prediction 18 41 - -
Gso19g1393 484 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 28 484 IPR044848 GO:0003700
Gso19g1393 484 Coils Coil 346 366 - -
Gso19g1393 484 PANTHER PROTEIN PHR1-LIKE 1-LIKE ISOFORM X1 28 484 - -
Gso19g1393 484 SUPERFAMILY Homeodomain-like 256 312 IPR009057 -
Gso19g1393 484 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 258 312 IPR006447 GO:0003677
Gso19g1393 484 Pfam Myb-like DNA-binding domain 260 311 IPR001005 -
Gso19g1393 484 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 255 315 IPR017930 -
Gso19g1393 484 MobiDBLite consensus disorder prediction 401 415 - -
Gso19g1393 484 Gene3D - 257 316 - -
Gso19g1393 484 MobiDBLite consensus disorder prediction 401 484 - -
Gso19g1393 484 MobiDBLite consensus disorder prediction 215 258 - -
Gso19g1393 484 Pfam MYB-CC type transfactor, LHEQLE motif 343 389 IPR025756 -
Gso19g1393 484 MobiDBLite consensus disorder prediction 468 484 - -
Gso19g1393 484 MobiDBLite consensus disorder prediction 215 260 - -
Gso19g1393 484 MobiDBLite consensus disorder prediction 416 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1393 Gso-Chr19 42768804 42776355 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1393 1 432 G2-like Transcription Factor Family AT4G28610 49.550 3.01e-110 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gso19g1393 Myb_DNA-binding 9.4e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1393 - - gmx:100810560 957.207
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1393 19 42768804 42776355 Gso3g1400 3 39952175 39958630 GST
Gso19g1393 19 42768804 42776355 Gso10g0340 10 3617827 3624380 PCT
Gso10g0340 10 3617827 3624380 Gso19g1393 19 42768804 42776355 PCT