Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1392 ATGACAACTTTTCAAAAGGTTCATGCTCTTCTATTTCATATATTCTTCTTCATATCGTTGCTTCCATTGAAAATAACTTCATCACCAACAACAGAAGCAGAAGCCCTTGTCAAATGGAAAAACAGTTTATCCCTTCTTCCTCCCTCTCTAAACTCATCATGGTCTCTCACAAACCTTGGCAACCTTTGCAATTGGGATGCCATTGCTTGTGACAACACTAACAATACAGTCTTGGAGATAAACTTGTCTGATGCCAATATCACCGGGACTCTCACTCCCTTGGATTTTGCTTCCCTCCCTAACCTCACCAAACTCAACCTTAATCACAACAATTTTGAAGGGTCAATACCATCAGCAATTGGCAACCTCTCCAAGCTCAGTTTATTGGACTTGGGAAACAACTTATTTGAAGAAACACTGCCTAATGAGCTAGGCCAGCTAAGGGAACTTCAATATCTTAGTTTTTACAACAACAATCTCAATGGAACCATTCCTTATCAGCTCATGAATCTTCCTAAGGTATGGTACATGGACCTTGGCTCAAACTACTTTATAACTCCTCCAGACTGGTCCCAATATTCAGGCATGCCTTCCTTAACTCGCCTTGGTTTGCATCTCAATGTCTTCACTGGTGAATTCCCAAGTTTCATACTTGAGTGCCAGAACTTGTCATACCTTGACATCTCACAGAATCACTGGACTGGCACAATACCAGAATCCATGTATAGCAATTTGCCCAAGCTTGAATACCTCAACCTCACCAACACAGGGCTAATAGGAAAACTGTCACCCAACTTGTCTATGCTTTCTAATCTCAAAGAACTTCGTATGGGTAATAACATGTTTAATGGTTCTGTTCCCACTGAGATAGGATTGATATCTGGGCTTCAAATTCTTGAATTGAATAACATTTTTGCCCATGGTAAAATTCCTTCTTCCTTAGGCCAACTCAGGGAGCTATGGCGTCTTGATCTCAGTATAAATTTTTTGAACTCTACAATTCCTTCTGAGCTTGGCCTATGTGCAAATCTATCCTTCTTGAGTTTAGCAGTGAATAGTTTGTCTGGTCCTTTACCTTTGTCGTTAGCTAATCTGGCTAAAATATCAGAATTGGGATTATCAGATAATTCCTTTTCTGGTCAATTTTCTGCTTCGCTCATCTCTAATTGGACTCAATTGATTTCCTTGCAAGTCCAAAACAATAGTTTTACAGGAAGGATTCCTCCACAAATTGGCCTGTTGAAAAAAATTAACTTCCTCTATCTCTACAATAATCAGTTCTCTGGTCCCATTCCTGTAGAGATTGGAAATCTGAAGGAAATGATAGAGTTAGACCTTTCACAAAACCAATTCTCAGGTCCAATTCCATTAACACTTTGGAATCTGACAAACATTCAAGTGCTGAATCTTTTCTTCAATGATCTCTCTGGAACCATTCCCATGGATATTGGAAACCTAACCTCACTGCAAATCTTTGATGTCAACACCAATAACTTGCATGGGGAGTTGCCAGAAACCATTGCTCAACTAACTGCTCTAAAAAAATTTTCTGTGTTCACCAATAACTTCACTGGAAGCCTTCCAAGAGAATTTGGAAAGAGTAATCCTTCTTTGACTCATATCTACCTTTCAAACAACAGTTTCTCTGGAGAACTGCCTCCTGGCTTGTGCAGTGATGGCAAGCTAACTATTTTGGCAGTCAACAACAACAGCTTTTCAGGGCCACTGCCAAAGTCCTTGAGAAATTGTTCGTCACTAATTAGAATTCGGCTTGATGATAACCAGTTCACTGGAAACATCACAGATTCATTTGGAGTACTCTCAAATCTTGTTTTTATCTCACTTAGTGGAAATCAGCTTGTCGGGGAGCTCTCCCCGGAGTGGGGTGAATGTGTCAATTTAACTGAGATGGAGATGGGAAGCAACAAACTTTCTGGAAAAATTCCATCTGAGCTAGGAAAGTTGATTCAATTAGGGCATCTAAGCCTACATTCAAATGAATTCACTGGCAATATCCCACCTGAAATTGGAAATCTAAGCCAACTTTTCAAGTTGAACTTGAGCAATAACCATTTATCAGGAGAAATCCCAAAGAGTTATGGGAGATTGGCTAAGCTAAATTTTCTTGATTTATCAAATAACAACTTCATTGGAAGCATTCCTAGAGAGCTCAGTGATTGCAAAAACTTATTGAGTATGAACTTAAGCCATAACAATCTATCTGGGGAGATTCCATATGAACTTGGCAATCTGTTCTCACTCCAAATCTTGTTGGACCTCAGCAGCAACTCTCTTTCGGGAGACCTTCCGCAGAACCTTGGAAAGTTAGCATCATTGGAGATTCTCAATGTCTCACACAACCATCTATCAGGGCCAATCCCACAATCATTTTCAAGCATGATCAGTCTTCAATCTATTGATTTTTCTCACAACAACTTGAGCGGTTTGATCCCCACAGGTGGTATTTTCCAGACAGCAACAGCTGAAGCCTATGTAGGGAACACAGGTTTGTGTGGTGAGGTAAAAGGATTAACTTGTCCCAAAGTGTTTTCCCCAGACAATTCTGGAGGGGTTAACAAAAAAGTTCTTCTTGGTGTTATCATACCAGTTTGTGTCTTATTTATTGGGATGATTGGTGTTGGAATCCTACTTTGCCAGCGGCTGAGGCACGCCAATAAACACCTTGATGAAGAATCCAAAAGAATTGAAAAAAGTGATGAGTCTACTAGCATGGTGTGGGGAAGAGATGGAAAATTCACATTTTCTGATCTTGTTAAGGCCACCGATGATTTCAATGAAAAGTACTGCATTGGAAAGGGAGGATTTGGAAGTGTTTATAGAGCAAAGTTACTCACAGGTCAAGTTGTTGCTGTTAAAAGGCTCAACATATTAGACTCTGACGACATTCCCGCTGTGAACCGCCAGAGCTTTCAGAATGAGATAAGATCTCTTACAGGAGTGAGGCACCGCAATATAATCAAGCTTTTTGGGTTCTGTACTTGGAGGGGACAAATGTTCTTGGTTTATGAACATGTAGACAGAGGAAGTTTGGCAAAAGTATTGTATGGAGAGGAAGGGAAATTGAAGCTAAGTTGGGCTACAAGGCTGAAAATTGTGCAGGGAGTAGCACATGCAATTTCATACCTGCACACTGATTGCTCCCCACCCATTGTGCACCGGGATGTTACATTGAATAACATACTACTAGACTCGGACTTAGAACCTCGTCTTGCAGATTTTGGCACTGCAAAACTGCTAAGCTCCAACACTTCAACATGGACCTCAGTTGCTGGTTCTTATGGCTACATGGCTCCAGAACTAGCACAAACAATGAGAGTCACTGACAAGTGTGACGTGTATAGTTTTGGAGTGGTGGTGTTGGAGATATTGATGGGAAAGCATCCTGGAGAACTCTTGACTATGCTGTCTTCAAACAAGTATTTGTCATCAATGGAGGAACCTCAGATGCTACTGAAGGATGTGCTTGACCAACGGCTTCGACTACCAACGGACCAATTAGCAGAAGCAGTAGTGTTCACAATGACCATAGCTTTGGCATGCACACGTGCGGCTCCAGAGTCCAGACCCATGATGCGTGCTGTGGCACAAGAACTATCGGCTACTACACAGGCTTGTCTTGCAGAGCCATTTGGCATGATAACAATGAGCAAGCTTGCAGGGTTCCAGAAATAG 3693 0.4124 MTTFQKVHALLFHIFFFISLLPLKITSSPTTEAEALVKWKNSLSLLPPSLNSSWSLTNLGNLCNWDAIACDNTNNTVLEINLSDANITGTLTPLDFASLPNLTKLNLNHNNFEGSIPSAIGNLSKLSLLDLGNNLFEETLPNELGQLRELQYLSFYNNNLNGTIPYQLMNLPKVWYMDLGSNYFITPPDWSQYSGMPSLTRLGLHLNVFTGEFPSFILECQNLSYLDISQNHWTGTIPESMYSNLPKLEYLNLTNTGLIGKLSPNLSMLSNLKELRMGNNMFNGSVPTEIGLISGLQILELNNIFAHGKIPSSLGQLRELWRLDLSINFLNSTIPSELGLCANLSFLSLAVNSLSGPLPLSLANLAKISELGLSDNSFSGQFSASLISNWTQLISLQVQNNSFTGRIPPQIGLLKKINFLYLYNNQFSGPIPVEIGNLKEMIELDLSQNQFSGPIPLTLWNLTNIQVLNLFFNDLSGTIPMDIGNLTSLQIFDVNTNNLHGELPETIAQLTALKKFSVFTNNFTGSLPREFGKSNPSLTHIYLSNNSFSGELPPGLCSDGKLTILAVNNNSFSGPLPKSLRNCSSLIRIRLDDNQFTGNITDSFGVLSNLVFISLSGNQLVGELSPEWGECVNLTEMEMGSNKLSGKIPSELGKLIQLGHLSLHSNEFTGNIPPEIGNLSQLFKLNLSNNHLSGEIPKSYGRLAKLNFLDLSNNNFIGSIPRELSDCKNLLSMNLSHNNLSGEIPYELGNLFSLQILLDLSSNSLSGDLPQNLGKLASLEILNVSHNHLSGPIPQSFSSMISLQSIDFSHNNLSGLIPTGGIFQTATAEAYVGNTGLCGEVKGLTCPKVFSPDNSGGVNKKVLLGVIIPVCVLFIGMIGVGILLCQRLRHANKHLDEESKRIEKSDESTSMVWGRDGKFTFSDLVKATDDFNEKYCIGKGGFGSVYRAKLLTGQVVAVKRLNILDSDDIPAVNRQSFQNEIRSLTGVRHRNIIKLFGFCTWRGQMFLVYEHVDRGSLAKVLYGEEGKLKLSWATRLKIVQGVAHAISYLHTDCSPPIVHRDVTLNNILLDSDLEPRLADFGTAKLLSSNTSTWTSVAGSYGYMAPELAQTMRVTDKCDVYSFGVVVLEILMGKHPGELLTMLSSNKYLSSMEEPQMLLKDVLDQRLRLPTDQLAEAVVFTMTIALACTRAAPESRPMMRAVAQELSATTQACLAEPFGMITMSKLAGFQK* 1231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1392 1230 Gene3D Ribonuclease Inhibitor 386 482 IPR032675 -
Gso19g1392 1230 Pfam Leucine Rich Repeat 778 799 IPR001611 GO:0005515
Gso19g1392 1230 SUPERFAMILY L domain-like 562 826 - -
Gso19g1392 1230 Pfam Protein kinase domain 933 1159 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso19g1392 1230 ProSitePatterns Tyrosine protein kinases specific active-site signature. 1057 1069 IPR008266 GO:0004672|GO:0006468
Gso19g1392 1230 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 30 176 - -
Gso19g1392 1230 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 296 417 - -
Gso19g1392 1230 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 171 326 - -
Gso19g1392 1230 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 416 1206 - -
Gso19g1392 1230 Gene3D Ribonuclease Inhibitor 29 191 IPR032675 -
Gso19g1392 1230 ProSiteProfiles Leucine-rich repeat profile. 705 728 IPR001611 GO:0005515
Gso19g1392 1230 Gene3D Ribonuclease Inhibitor 192 385 IPR032675 -
Gso19g1392 1230 Gene3D Ribonuclease Inhibitor 483 848 IPR032675 -
Gso19g1392 1230 ProSitePatterns Protein kinases ATP-binding region signature. 937 959 IPR017441 GO:0005524
Gso19g1392 1230 Coils Coil 885 905 - -
Gso19g1392 1230 SMART LRR_typ_2 269 293 IPR003591 -
Gso19g1392 1230 SMART LRR_typ_2 607 631 IPR003591 -
Gso19g1392 1230 SMART LRR_typ_2 123 147 IPR003591 -
Gso19g1392 1230 SMART LRR_typ_2 703 727 IPR003591 -
Gso19g1392 1230 SMART LRR_typ_2 800 825 IPR003591 -
Gso19g1392 1230 SMART LRR_typ_2 99 122 IPR003591 -
Gso19g1392 1230 SMART LRR_typ_2 317 341 IPR003591 -
Gso19g1392 1230 SMART LRR_typ_2 486 510 IPR003591 -
Gso19g1392 1230 SMART LRR_typ_2 536 559 IPR003591 -
Gso19g1392 1230 SMART LRR_typ_2 655 679 IPR003591 -
Gso19g1392 1230 SMART LRR_typ_2 776 799 IPR003591 -
Gso19g1392 1230 SUPERFAMILY RNI-like 289 620 - -
Gso19g1392 1230 SUPERFAMILY L domain-like 61 391 - -
Gso19g1392 1230 CDD STKc_IRAK 937 1205 - -
Gso19g1392 1230 Gene3D Phosphorylase Kinase; domain 1 891 1011 - -
Gso19g1392 1230 ProSiteProfiles Protein kinase domain profile. 931 1218 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso19g1392 1230 Pfam Leucine rich repeat 100 160 IPR001611 GO:0005515
Gso19g1392 1230 Gene3D Transferase(Phosphotransferase) domain 1 1012 1215 - -
Gso19g1392 1230 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 171 326 - -
Gso19g1392 1230 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 296 417 - -
Gso19g1392 1230 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 416 1206 - -
Gso19g1392 1230 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 30 176 - -
Gso19g1392 1230 SUPERFAMILY Protein kinase-like (PK-like) 912 1205 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1392 Gso-Chr19 42759351 42763822 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1392 363 818 Receptor kinase-like Gene Family AT4G08850 31.393 8.53e-64 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gso19g1392 Pkinase 4.5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1392 - - gmx:100809137 2411.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1392 19 42759351 42763822 Gso3g1398 3 39938656 39945347 GST