Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1391 ATGACAACTTTTCAAAAGGTTCATGCTCTTCTTTTTCATATACTCTTGCTATCTCTGCTTCCATTGAAAATCACTTCATCACCAACAACAGAGGCAGAAGCCCTTATCAAATGGAAAAACAGTTTATCTCCTCCTCTTCCTCCTTCTCTAAACTCATCATGGTCCCTCACAAACCTTGGCAACCTTTGCAACTGGGATGCCATTGTTTGTGACAACACTAACACAACAGTCTCACAGATAAACTTGTCTGATGCCAATCTAACTGGGACTCTCACTGCCTTGGATTTTTCTTCCCTCCCTAACCTTACTCAACTCAACCTCAATGCCAACCATTTTGGAGGGTCAATACCATCAGCAATTGACAAACTATCCAAGCTCACTTTATTGGACTTTGGTAACAACTTATTTGAAGGCACACTGCCTTATGAACTGGGCCAGCTAAGGGAGCTTCAATATCTTAGCTTTTACAACAACAATCTCAATGGCACCATTCCTTATCAGCTCATGAATCTTCCTAAGGTATGGTACATGGACCTTGGATCAAACTACTTTATACCTCCTCCTGACTGGTCCCAATATTCATGCATGCCTTCCTTAACTCGCCTTGCTTTGCATCTCAATCCAACACTCACTAGTGAATTCCCAAGTTTCATACTGGGGTGCCATAACTTGACATACCTTGACATCTCTCAGAATCAATGGAAAGGCACAATACCAGAATCCATGTATAACAATTTGGTCAAGCTGGAATACCTCAACCTCTCCAGTTCTGGGCTAGAAGGAAAACTGTCTTCCAACTTGTCCAAGCTTTCTAATCTCAAAGATCTTCGTATAGGTAATAACATCTTTAATGGTTCTGTTCCCACTGAGATAGGATTGATATCGGGGCTTCAAATTCTTGAATTGAATAACATTTCTGCCCATGGTAATATTCCTTCTTCCTTAGGCCTACTCAGGGAGCTTTGGCATCTTGACCTAAGTAAGAATTTTTTTAACTCATCAATCCCTTCTGAGCTTGGCCAATGCACAAATCTATCCTTCCTGAGTTTAGCAGAGAATAATTTGACGGATCCTTTGCCTATGTCATTAGTTAATCTGGCTAAAATATCAGAATTGGGATTATCAGATAATTTCCTTTCTGGTCAACTTTCTGCTTCACTCATCTCTAATTGGATCCGGTTGATCTCCTTGCAACTCCAAAACAATAAATTTACAGGAAGGATTCCTACACAAATAGGCCTGTTGAAAAAAATTAACATCCTCTTTATGCGCAATAATCTTTTCTCTGGTCCCATTCCTGTAGAGATTGGAAACCTGAAAGAAATGACAAAGTTAGACCTTTCACTAAATGGATTCTCTGGTCCAATTCCATCAACACTTTGGAATCTGACAAACATTCGAGTCGTGAATCTTTATTTCAACGAGCTCTCTGGCACCATTCCTATGGATATTGGAAACTTGACCTCATTGGAAACCTTTGATGTCGACAACAATAAATTGTATGGGGAGTTGCCAGAAACCGTTGCTCAACTACCTGCTTTAAGTCATTTTTCTGTGTTCACCAATAACTTCACTGGCAGCATTCCCAGAGAATTTGGAAAGAATAATCCTTCTTTGACTCATGTGTATCTTTCACACAACAGCTTCTCTGGAGAACTACCTCCTGACTTGTGCAGTGATGGCAAGCTAGTTATTTTGGCAGTCAATAACAACAGCTTTTCAGGGCCAGTGCCAAAGTCCTTGAGGAATTGTTCATCACTGACTAGACTTCAGCTTCATGATAACCAGTTAACTGGAGACATCACAGATTCATTTGGGGTACTCCCAAATCTTGATTTTATTTCACTTAGTAGAAATTGGCTTGTTGGGGAGCTCTCCCCGGAGTGGGGCGAATGTATCAGTTTAACTCGGATGGATATGGGAAGCAACAATCTTTCTGGAAAAATTCCATCTGAGCTAGGTAAGTTGAGTCAATTAGGGTATCTGAGCCTGCATTCCAATGATTTCACCGGCAATATCCCACCTGAAATTGGAAATCTAGGCCTGCTTTTCATGTTCAACTTGAGCAGTAACCATTTATCAGGAGAAATCCCCAAGAGCTATGGCAGATTGGCTCAGCTAAATTTTCTTGATTTATCAAATAACAAGTTCAGTGGAAGCATTCCTAGAGAGCTCAGTGATTGCAATCGCTTACTGAGTCTGAATTTAAGCCAAAACAATCTATCTGGGGAGATACCATTTGAACTTGGCAATCTGTTCTCACTCCAAATCATGGTGGACCTCAGCCGCAACTCTCTTTCTGGAGCTATTCCCCCAAGCCTTGGAAAGTTAGCATCGTTGGAGGTTCTCAATGTCTCACACAACCATCTTACAGGAACAATCCCACAATCACTGTCAAGCATGATCAGCCTTCAATCCATTGATTTTTCTTACAACAACTTGAGTGGTTCAATCCCCATAGGTCGTGTTTTCCAGACCGCAACTGCCGAAGCCTATGTTGGGAACTCGGGTTTGTGTGGTGAGGTAAAAGGATTAACTTGCGCCAATGTATTTTCCCCACACAAATCCCGAGGGGTTAACAAAAAAGTACTTTTTGGTGTTATCATACCAGTTTGTGTCTTATTTATTGGGATGATTGGTGTTGGAATCCTACTTTGCCGGCGGCATTCCAAAAAAATAATTGAAGAAGAGTCCAAAAGAATTGAAAAAAGTGATCAGCCTATTAGCATGGTGTGGGGAAGAGATGGAAAATTCTCATTTTCTGATCTTGTCAAGGCCACCGATGACTTTGATGACAAGTACTGCATTGGAAATGGAGGATTTGGAAGTGTTTATAGAGCACAATTACTCACAGGCCAAGTTGTTGCTGTTAAAAGGCTCAACATATCAGACTCTGATGACATTCCAGCAGTGAACCGCCATAGCTTTCAGAATGAGATAGAATCACTTACAGGAGTGAGGCACCGCAATATAATAAAGCTTTATGGGTTCTGTTCTTGTAGGGGACAAATGTTCTTGGTTTATGAACATGTAGACAGAGGAAGTTTGGCAAAAGTATTGTATGCAGAGGAAGGAAAATCGGAGCTAAGTTGGGCCAGAAGGCTGAAAATTGTGCAGGGAATAGCTCATGCAATTTCATACCTGCACAGTGACTGCTCCCCACCAATTGTGCACCGGGACGTAACACTGAATAACATACTACTAGACTCCGACTTAGAACCTCGTGTTGCAGATTTTGGCACTGCAAAGCTGCTAAGCTCAAACACTTCAACATGGACCTCAGCCGCTGGATCCTTTGGCTACATGGCTCCAGAACTAGCACAAACAATGAGGGTGACTGACAAGTGTGACGTGTATAGTTTTGGAGTGGTGGTGTTGGAGATAATGATGGGAAAGCATCCTGGAGAACTCCTGACTACAATGTCTTCAAACAAGTATTTGCCATCAATGGAGGAACCACAGGTGCTACTGAAGGATGTGCTTGATCAACGGCTTCCACCTCCAAGGGGCAGATTAGCAGAAGCAGTAGTGTTGATAGTGACCATAGCTTTGGCATGCACACGTTTGTCTCCAGAGTCCAGACCCGTGATGCGTTCTGTGGCTCAAGAACTGTCGTTGGCTACTACGCAGGCTTGTCTTGCAGAGCCATTTGGCATGATAACCTTGAGCAAGCTTGCAGGGTTCCACAAATACTGTGTCATGTAG 3705 0.4219 MTTFQKVHALLFHILLLSLLPLKITSSPTTEAEALIKWKNSLSPPLPPSLNSSWSLTNLGNLCNWDAIVCDNTNTTVSQINLSDANLTGTLTALDFSSLPNLTQLNLNANHFGGSIPSAIDKLSKLTLLDFGNNLFEGTLPYELGQLRELQYLSFYNNNLNGTIPYQLMNLPKVWYMDLGSNYFIPPPDWSQYSCMPSLTRLALHLNPTLTSEFPSFILGCHNLTYLDISQNQWKGTIPESMYNNLVKLEYLNLSSSGLEGKLSSNLSKLSNLKDLRIGNNIFNGSVPTEIGLISGLQILELNNISAHGNIPSSLGLLRELWHLDLSKNFFNSSIPSELGQCTNLSFLSLAENNLTDPLPMSLVNLAKISELGLSDNFLSGQLSASLISNWIRLISLQLQNNKFTGRIPTQIGLLKKINILFMRNNLFSGPIPVEIGNLKEMTKLDLSLNGFSGPIPSTLWNLTNIRVVNLYFNELSGTIPMDIGNLTSLETFDVDNNKLYGELPETVAQLPALSHFSVFTNNFTGSIPREFGKNNPSLTHVYLSHNSFSGELPPDLCSDGKLVILAVNNNSFSGPVPKSLRNCSSLTRLQLHDNQLTGDITDSFGVLPNLDFISLSRNWLVGELSPEWGECISLTRMDMGSNNLSGKIPSELGKLSQLGYLSLHSNDFTGNIPPEIGNLGLLFMFNLSSNHLSGEIPKSYGRLAQLNFLDLSNNKFSGSIPRELSDCNRLLSLNLSQNNLSGEIPFELGNLFSLQIMVDLSRNSLSGAIPPSLGKLASLEVLNVSHNHLTGTIPQSLSSMISLQSIDFSYNNLSGSIPIGRVFQTATAEAYVGNSGLCGEVKGLTCANVFSPHKSRGVNKKVLFGVIIPVCVLFIGMIGVGILLCRRHSKKIIEEESKRIEKSDQPISMVWGRDGKFSFSDLVKATDDFDDKYCIGNGGFGSVYRAQLLTGQVVAVKRLNISDSDDIPAVNRHSFQNEIESLTGVRHRNIIKLYGFCSCRGQMFLVYEHVDRGSLAKVLYAEEGKSELSWARRLKIVQGIAHAISYLHSDCSPPIVHRDVTLNNILLDSDLEPRVADFGTAKLLSSNTSTWTSAAGSFGYMAPELAQTMRVTDKCDVYSFGVVVLEIMMGKHPGELLTTMSSNKYLPSMEEPQVLLKDVLDQRLPPPRGRLAEAVVLIVTIALACTRLSPESRPVMRSVAQELSLATTQACLAEPFGMITLSKLAGFHKYCVM* 1235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1391 1234 SMART LRR_typ_2 537 560 IPR003591 -
Gso19g1391 1234 SMART LRR_typ_2 99 122 IPR003591 -
Gso19g1391 1234 SMART LRR_typ_2 608 632 IPR003591 -
Gso19g1391 1234 SMART LRR_typ_2 777 801 IPR003591 -
Gso19g1391 1234 SMART LRR_typ_2 123 147 IPR003591 -
Gso19g1391 1234 SMART LRR_typ_2 487 511 IPR003591 -
Gso19g1391 1234 SMART LRR_typ_2 318 342 IPR003591 -
Gso19g1391 1234 SMART LRR_typ_2 704 728 IPR003591 -
Gso19g1391 1234 SMART LRR_typ_2 656 680 IPR003591 -
Gso19g1391 1234 CDD STKc_IRAK 936 1204 - -
Gso19g1391 1234 Gene3D Phosphorylase Kinase; domain 1 890 1010 - -
Gso19g1391 1234 SUPERFAMILY L domain-like 61 383 - -
Gso19g1391 1234 Gene3D Ribonuclease Inhibitor 534 852 IPR032675 -
Gso19g1391 1234 Gene3D Ribonuclease Inhibitor 191 533 IPR032675 -
Gso19g1391 1234 SUPERFAMILY Protein kinase-like (PK-like) 910 1204 IPR011009 -
Gso19g1391 1234 Pfam Protein kinase domain 933 1158 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso19g1391 1234 ProSiteProfiles Protein kinase domain profile. 930 1206 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso19g1391 1234 SUPERFAMILY RNI-like 582 827 - -
Gso19g1391 1234 SUPERFAMILY RNI-like 300 665 - -
Gso19g1391 1234 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 417 531 - -
Gso19g1391 1234 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 292 419 - -
Gso19g1391 1234 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 538 1205 - -
Gso19g1391 1234 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 4 302 - -
Gso19g1391 1234 Gene3D Transferase(Phosphotransferase) domain 1 1011 1214 - -
Gso19g1391 1234 ProSitePatterns Tyrosine protein kinases specific active-site signature. 1056 1068 IPR008266 GO:0004672|GO:0006468
Gso19g1391 1234 Gene3D Ribonuclease Inhibitor 28 190 IPR032675 -
Gso19g1391 1234 Pfam Leucine rich repeat N-terminal domain 30 71 IPR013210 -
Gso19g1391 1234 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 292 419 - -
Gso19g1391 1234 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 417 531 - -
Gso19g1391 1234 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 4 302 - -
Gso19g1391 1234 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 538 1205 - -
Gso19g1391 1234 Pfam Leucine rich repeat 759 814 IPR001611 GO:0005515
Gso19g1391 1234 ProSitePatterns Protein kinases ATP-binding region signature. 936 958 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1391 Gso-Chr19 42747396 42751703 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1391 26 650 Receptor kinase-like Gene Family AT4G08850 32.462 1.31e-78 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gso19g1391 Pkinase 2.9e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1391 - - gmx:100808600 2007.65