Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1385 ATGGGGAGTAGGGCTAGGCAGGGGAGGAGATTGCAGACGATGATGAAGTGCATGTGCCTGAGGGAGCCGTTGAAGGGAGAAGATGAAACGGTTCCTTCTTCTGATTCTCTTGCAATCAGGGAATTCTATTCTTCAACGGCAAGTGGGCGTTCTGGCCCCGACGGAGAAATTGAGATGATGGGGTCGGGTTCTGGGAACATGGATGAAGCCGAATTGTCCTTGCGTGAGAGTGGCATCATGGACATCATGGACAATGAGGAAGCAAGAGCTTTGTTAGGAAAAGATGAATATCAGGAAGGAAATATAGAAGCTGCTTTACATGTTTATGAGAGGATAAATATAAGTGCTGTGACTTCCAAGATGAAAATTTCCCTTGCCAAAAGCAGAGAACACCGTAAGAAACATTACCATTATTATGCTACTCCTCCGATGTCCATATACACGGCTGGATTACTGTTGGAAGCAATTTTCCTAAAAGCAAAATGTTTGCAGGTTCTGGGGAGGTTTAAAGAAGCTGCCCAAACTTGTAAAGTTATTCTGGACATAGTTGAGTCTTCTTTACCTGAAGGCTTGCCTCAAAACTTCGGTGATGAGGGTAAATTGCAGGAGACTTTGAGTAAGGTAGTTGAGCTACTTCCAGAATTGTGGAAACTTGCTGATTCTCCCCGTGATGTTATTTTGTCTTACCGTCGTGCACTCCTTCACCGACGGAATCTTGATGCAAAAACCATAGCAAAGATTCAGAAAGAATTTGTTGTTTTTCTTCTATATAGTGGAGGGGAAGCAATCCTTTCAAATCTTCGTTCCCATATGGACAGCTCGTTTGTACCCAGAAACAACTTAGAAGAGGCTATTCTTCTTTTAATGATTTTGCTGAGAAAAATATCTCTAAATAAAATTGAATGGGATCCGTCAATTTTGGACCACCTTTCGTTTGCTCTATCTGTTTCAGGGGATTTGACAGCTTTAGCCCATCAATGGGAAGAATTACTCCCTGGGACTATCAATCGAAGAGAAAGATACCATGCCTTATCTCTTTGTTATTATGGTGCAGGTAATGACTTGGTAGCACTGAATCTTCTTAGGAAATTGCTGAGTAGTAGAGAGGACCCAAAACATGTTCCTTCTTTGTTAATGGCTTCTAAGATTTGTAGCATGAACCCTGATCTTGCAAAAGATGGGGCAAGCTTAGCTTGCAAGGTGCTTGAGAACTTGGATGGAAGATGTGATCAGTTGGAAAGTCTTTCCAGTTGCTTACTTGGTGTTTCACTTTCAGCACACTCAAAAATTGCTATTTCTAATTCTGAGAGGGTTGAGAAACAATCTGAGGCACTTCATTCTCTGGAAACTGCAAGCAAAGTGACCAGAATGAGGAATCCCCCTGTAATATACTACTTGAGCTTAGAATGTGCAGAGCAAAGGAAGTTGGATGTTGCACTTCATTATGCAAAATGCTTTCTAAACTTGGAAGCTGGGTCTAATATTAAAGGGTGGTTATTGTTAGCCCGGATATTATCAGCTCAAAAACAGTTTTTGGATGCTGAATCTATTGTCGATGAAGCTTTGAACCAGACTGGAATATGGGATCAAGGAGAGTTACTGCGAACAAAAGCTAAACTACAAATTGCACAGGGCCAATTGAAGAGTGCCATTGAAACCTATACTCAGCTTCTTGCTATTCTCCTAGTTCAGAGAAAAACTTTTGGTTCAAAGAAGAAGCTGTATAAGGACTACATAGATCATGCTAGGAACATGGAAGTGGAAATATGGCATGATCTTGCTTATGTGTACATAAGTCTGTCACGGTGGCATGATGCAGAGGTGTGTCTTTCGAAATCTAAAGCCATCAAACTATACTCTGCTTCTAGATGTCATGCAATAGGTACAATGTACGAAGCAAAGGGCCTTTACAAAGAGGCTATAAAAGCTTTTCGCGATGCTTTGAGCATTGATCCCGGACATGTTCCTAGCTTGATCTCTACTGCTGTGGTTCTTAGACGGTGCAGTAATCAATCAAATCCTGCTATCAGAAGCTTTCTGATGGATGCACTACGGCATGACAGATTTAATGCTTCTGCTTGGTATAATCTTGGCATTTTTAACAAGGATGAGGGTACAATTCTAGAAGCTGCAGACTGTTTTGAGACAGCAAACTTTCTTGAAGAATCGGCACCAGTTGAACCTTTCAGATGA 2193 0.415 MGSRARQGRRLQTMMKCMCLREPLKGEDETVPSSDSLAIREFYSSTASGRSGPDGEIEMMGSGSGNMDEAELSLRESGIMDIMDNEEARALLGKDEYQEGNIEAALHVYERINISAVTSKMKISLAKSREHRKKHYHYYATPPMSIYTAGLLLEAIFLKAKCLQVLGRFKEAAQTCKVILDIVESSLPEGLPQNFGDEGKLQETLSKVVELLPELWKLADSPRDVILSYRRALLHRRNLDAKTIAKIQKEFVVFLLYSGGEAILSNLRSHMDSSFVPRNNLEEAILLLMILLRKISLNKIEWDPSILDHLSFALSVSGDLTALAHQWEELLPGTINRRERYHALSLCYYGAGNDLVALNLLRKLLSSREDPKHVPSLLMASKICSMNPDLAKDGASLACKVLENLDGRCDQLESLSSCLLGVSLSAHSKIAISNSERVEKQSEALHSLETASKVTRMRNPPVIYYLSLECAEQRKLDVALHYAKCFLNLEAGSNIKGWLLLARILSAQKQFLDAESIVDEALNQTGIWDQGELLRTKAKLQIAQGQLKSAIETYTQLLAILLVQRKTFGSKKKLYKDYIDHARNMEVEIWHDLAYVYISLSRWHDAEVCLSKSKAIKLYSASRCHAIGTMYEAKGLYKEAIKAFRDALSIDPGHVPSLISTAVVLRRCSNQSNPAIRSFLMDALRHDRFNASAWYNLGIFNKDEGTILEAADCFETANFLEESAPVEPFR* 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1385 730 Gene3D Tetratricopeptide repeat domain 63 447 IPR011990 GO:0005515
Gso19g1385 730 SMART tpr_5 495 528 IPR019734 GO:0005515
Gso19g1385 730 SMART tpr_5 691 724 IPR019734 GO:0005515
Gso19g1385 730 SMART tpr_5 621 654 IPR019734 GO:0005515
Gso19g1385 730 SMART tpr_5 153 186 IPR019734 GO:0005515
Gso19g1385 730 SMART tpr_5 531 564 IPR019734 GO:0005515
Gso19g1385 730 SMART tpr_5 587 620 IPR019734 GO:0005515
Gso19g1385 730 SUPERFAMILY TPR-like 439 560 IPR011990 GO:0005515
Gso19g1385 730 Gene3D Tetratricopeptide repeat domain 448 725 IPR011990 GO:0005515
Gso19g1385 730 ProSiteProfiles TPR repeat profile. 621 654 IPR019734 GO:0005515
Gso19g1385 730 SUPERFAMILY TPR-like 153 372 IPR011990 GO:0005515
Gso19g1385 730 MobiDBLite consensus disorder prediction 44 68 - -
Gso19g1385 730 PANTHER PROTEIN NPG1 7 730 IPR043376 -
Gso19g1385 730 SUPERFAMILY TPR-like 532 717 IPR011990 GO:0005515
Gso19g1385 730 Pfam Tetratricopeptide repeat 622 653 IPR019734 GO:0005515
Gso19g1385 730 PANTHER TETRATRICOPEPTIDE-LIKE HELICAL DOMAIN-CONTAINING PROTEIN-RELATED 7 730 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1385 Gso-Chr19 42686132 42693513 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1385 15 730 Calmodulin-binding Proteins AT4G28600 54.658 0.0 723
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1385 K21843 - gmx:100809498 1407.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1385 19 42686132 42693513 Gso3g1391 3 39872787 39878342 GST
Gso19g1385 19 42686132 42693513 Gso10g0336 10 3584396 3590379 PCT