Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1380 ATGTCTGTGATGATGGATCATGTTATTGGTGGGAAGTTTAAACTGGGAAGGAAAATCGGGAGTGGGTCTTTTGGGGAGCTTTATATAGCTGTTAATATACAAACTGGAGAGGAGGTGGCTGTCAAGCTGGAACCTGTGAAGACCAAGCATCCCCAGCTTCTCTATGAGTCAAAATTGTATATGCTTCTTCAAGGAGGAACGGGGATTCCTCATCTCAAGTGGTTTGGAGTAGAGGGAGACTACAATGTCATGGCAATTGATCTTCTTGGACCAAGTCTGGAAGATTTGTTCAATTATTGTAACCGGAAGTTAACATTGAAGACAGTGTTAATGCTTGCTGATCAATTAATTAACAGAGTTGAATATATGCATTCTAGAGGTTTCCTTCACCGTGACATTAAGCCAGACAATTTTTTAATGGGCCTAGGACGTAAAGCAAACCAGGTGTACATCATTGACTATGGCCTTGCAAAAAAATATAGGGATCTTCAGACTCATAGGCACATACCATACAGGGAAAACAAGAACCTTACAGGCACAGCTCGGTATGCAAGTGTCAACACTCATCTTGGAATTGAACAAAGCAGAAGGGATGATTTGGAATCTCTTGGTTATGTGCTCATGTACTTCTTAAGAGGAAGTCTTCCTTGGCAGGGACTAAAGGCTGGCACCAAAAAACAAAAATATGATAAAATCAGTGAGAAGAAAATGTCAACTTCAATAGAGGTGCTCTGCAAGTCATATCCCTCAGAATTTGTATCGTATTTTAACTACTGCCGAACGTTGCGGTTTGAAGACAAGCCTGATTATTCATATTTAAAGAGGCTTTTTCGAGATTTATTTATCCGAGAAGGCTATCAATTTGACTACGTTTTTGATTGGACTATATTGAAGTATCCGCAGATTGGTGGCAGCAGCTCTAGAGGACGGCATGAAAGTGGCAAGGCAGCTATGCATGCAGGACCATCTGTACAAAAGCCAGAAAAAGTATCAGTTGGGAAAGAGATTCGAGAAAAATTCTCTGGTGCTGTTGAAGCTTTCTCCCGGAGGAACCCAACAAGTCCTAGTCCTCGTGGTGATCACTCCAAACATAGGAGTTTTGAGGAAGTAGCGGTACACAAGGATGTGTACCGTGATCAAGAGAAAGGACGCAATTCATCTCGATATGGCAGCAGTTCAAGAAGACCCATAATCTCATCGTCAACTAGGCCAAGTTCCTCTGGTGATCATACTGACAGTCGTACTGGCCGGCTAACTTCAAGTGGAAATCGATCATCTGCCTCACATAGAAATATTCAACCTATGTATGAGACAAAACAACCAACTTACATGCGCTCTGGATCCACCAGAGGCAACCGCGATGATCCTCTGCGGAGTTTTGAGCTCCTCTCCATCAGGAAGTAA 1404 0.4252 MSVMMDHVIGGKFKLGRKIGSGSFGELYIAVNIQTGEEVAVKLEPVKTKHPQLLYESKLYMLLQGGTGIPHLKWFGVEGDYNVMAIDLLGPSLEDLFNYCNRKLTLKTVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYIIDYGLAKKYRDLQTHRHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDKISEKKMSTSIEVLCKSYPSEFVSYFNYCRTLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTILKYPQIGGSSSRGRHESGKAAMHAGPSVQKPEKVSVGKEIREKFSGAVEAFSRRNPTSPSPRGDHSKHRSFEEVAVHKDVYRDQEKGRNSSRYGSSSRRPIISSSTRPSSSGDHTDSRTGRLTSSGNRSSASHRNIQPMYETKQPTYMRSGSTRGNRDDPLRSFELLSIRK* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1380 467 MobiDBLite consensus disorder prediction 386 449 - -
Gso19g1380 467 MobiDBLite consensus disorder prediction 330 344 - -
Gso19g1380 467 ProSitePatterns Protein kinases ATP-binding region signature. 19 42 IPR017441 GO:0005524
Gso19g1380 467 PANTHER CASEIN KINASE-RELATED 5 456 - -
Gso19g1380 467 ProSiteProfiles Protein kinase domain profile. 13 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso19g1380 467 Pfam Protein kinase domain 14 231 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso19g1380 467 SMART serkin_6 13 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso19g1380 467 MobiDBLite consensus disorder prediction 356 385 - -
Gso19g1380 467 MobiDBLite consensus disorder prediction 305 467 - -
Gso19g1380 467 SUPERFAMILY Protein kinase-like (PK-like) 8 294 IPR011009 -
Gso19g1380 467 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672|GO:0006468
Gso19g1380 467 CDD STKc_CK1_delta_epsilon 12 286 - -
Gso19g1380 467 Gene3D Transferase(Phosphotransferase) domain 1 2 341 - -
Gso19g1380 467 PANTHER CASEIN KINASE I-LIKE PROTEIN 5 456 - -
Gso19g1380 467 MobiDBLite consensus disorder prediction 451 467 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1380 Gso-Chr19 42636429 42643079 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1380 6 217 Miscellaneous Gene Families AT1G29230 27.232 3.23e-12 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Gso19g1380 Pkinase 1.6e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1380 K08960 - gmx:100807882 903.279
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1380 19 42636429 42643079 Gso3g1385 3 39819958 39825760 GST
Gso19g1380 19 42636429 42643079 Gso10g0329 10 3527859 3535975 PCT
Gso10g0329 10 3527859 3535975 Gso19g1380 19 42636429 42643079 PCT