Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1379 ATGGTAAGGAAAATGGATTCTGCAAGGAGTTGGTTACAGAAATTTCAACCACGTGATAAATTGAGGGCTTCTACAAGGAAGAATGATGATACTAATGGTGAAGATGAAATTCCAAATATGTCTATGGATGAAGCAACTCTTTCCAATATCACAAAACAAAAGGTTGCAGCTGCTAAACAATACATTGAGAACCACTACAAGGAACAAATGAAAAGCCTTCAAGAGAGGAAGGAGCGTCGAACCATCTTGGAAAAGAAGTTGGCTGACGCTGATGTCTCTGAGGAAGATCAAAATAACCTACTTAAATTTTTAGAGAAAAAGGAAACTGAATATATGCGTCTTCAAAGGCACAAAATGGGTGTCGACGATTTTGAGTTATTAACTATGATTGGAAAAGGTGCATTTGGGGAGGTTAGAGTCTGTAGGGAAAAGACTACAGATCATGTATATGCAATGAAAAAGTTAAAGAAATCAGAAATGCTTCGTAGAGGCCAGGTAGAACATGTTAGAGCTGAAAGGAATCTTCTGGCAGAGGTTGACAACAATTGCATAGTTAAACTTTATTGTTCTTTTCAAGATGACGAATATTTGTATCTTATTATGGAATATCTACCGGGTGGGGATATGATGACTCTACTCATGAGAAAGGATATCTTGACTGAAGATGAAACCCGATTTTATGTGGGGGAAACAGTTTTAGCTATTGAATCTATACATAAACACAATTATATACATAGGGATATTAAGCCTGACAACTTGTTACTTGATAGATATGGACACTTAAGACTGTCAGATTTTGGACTATGTAAACCATTAGATTGTAGTACACTTGAAGAAGCAGATTTTTCTACGAGTCAAAATGCTAATGGATCTACACGAAATGATGAACATGCAACTCCAAAACGCACACAACAAGAACAATTGCAAAATTGGCAGAAAAATAGAAGGACACTCGCGTATTCTACGGTTGGTACACCGGATTATATTGCTCCAGAAGTTCTAATGAAAAAAGGTTATGGGATGGAATGTGATTGGTGGTCACTTGGAGCTATTATGTATGAAATGTTAGTGGGATATCCACCTTTTTATTCTGATGATCCAATGTCAACATGTAGGAAGATAGTAAATTGGAAATCTCACTTAAAATTTCCTGAAGAAGTAAGGTTATCTCCAGAGGCCAAAGATCTTATAAGTAAGCTTTTGTGTAATGTTAATCAAAGGTTGGGCTCAAATGGTGCAGATGAAATAAAGGCTCATCAATTCTTTAATGGTGTGGAATGGGATAAATTGTATCAAATGGAAGCTGCCTTTATTCCTGAGGTCAATGATGAGTTAGATACTCAAAATTTTGAAAAGTTTGAAGAGTCTGACAGTCAATCTCATTCATCGTCAAGAATTGGTCCATGGAGGAAGATGATTTCTTCTAAAGACTTTAATTTTGTCGGATACACATACAAGAACTTTGAAATTGTCAATGACTATCAAGTTCCTGGAATGGCTGAATTAAGGAAGAAAACATCAAAGACAAAAAAACCATCCATCAAATCCTTATTTGATTGTGAGAGTGAGGCATCTGAGGCTTCAGATTCAACAACAAGCATAACTACGAAGTATGATGATCTACCTCCTCAACCAAAATAG 1641 0.362 MVRKMDSARSWLQKFQPRDKLRASTRKNDDTNGEDEIPNMSMDEATLSNITKQKVAAAKQYIENHYKEQMKSLQERKERRTILEKKLADADVSEEDQNNLLKFLEKKETEYMRLQRHKMGVDDFELLTMIGKGAFGEVRVCREKTTDHVYAMKKLKKSEMLRRGQVEHVRAERNLLAEVDNNCIVKLYCSFQDDEYLYLIMEYLPGGDMMTLLMRKDILTEDETRFYVGETVLAIESIHKHNYIHRDIKPDNLLLDRYGHLRLSDFGLCKPLDCSTLEEADFSTSQNANGSTRNDEHATPKRTQQEQLQNWQKNRRTLAYSTVGTPDYIAPEVLMKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPMSTCRKIVNWKSHLKFPEEVRLSPEAKDLISKLLCNVNQRLGSNGADEIKAHQFFNGVEWDKLYQMEAAFIPEVNDELDTQNFEKFEESDSQSHSSSRIGPWRKMISSKDFNFVGYTYKNFEIVNDYQVPGMAELRKKTSKTKKPSIKSLFDCESEASEASDSTTSITTKYDDLPPQPK* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1379 546 MobiDBLite consensus disorder prediction 521 546 - -
Gso19g1379 546 ProSitePatterns Serine/Threonine protein kinases active-site signature. 243 255 IPR008271 GO:0004672|GO:0006468
Gso19g1379 546 Gene3D Transferase(Phosphotransferase) domain 1 208 440 - -
Gso19g1379 546 ProSitePatterns Protein kinases ATP-binding region signature. 130 153 IPR017441 GO:0005524
Gso19g1379 546 CDD STKc_NDR_like 122 486 - -
Gso19g1379 546 ProSiteProfiles Protein kinase domain profile. 124 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso19g1379 546 PANTHER SERINE/THREONINE-PROTEIN KINASE 28 533 - -
Gso19g1379 546 MobiDBLite consensus disorder prediction 523 539 - -
Gso19g1379 546 MobiDBLite consensus disorder prediction 283 310 - -
Gso19g1379 546 Pfam Protein kinase domain 125 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso19g1379 546 SUPERFAMILY Protein kinase-like (PK-like) 97 476 IPR011009 -
Gso19g1379 546 MobiDBLite consensus disorder prediction 1 41 - -
Gso19g1379 546 SMART pkinase_C_6 423 487 IPR000961 GO:0004674|GO:0005524|GO:0006468
Gso19g1379 546 Gene3D Phosphorylase Kinase; domain 1 122 451 - -
Gso19g1379 546 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 28 533 - -
Gso19g1379 546 SMART serkin_6 124 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso19g1379 546 MobiDBLite consensus disorder prediction 13 34 - -
Gso19g1379 546 Pfam Protein kinase C terminal domain 441 485 IPR017892 GO:0004674|GO:0005524|GO:0006468
Gso19g1379 546 ProSiteProfiles AGC-kinase C-terminal domain profile. 423 495 IPR000961 GO:0004674|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1379 Gso-Chr19 42622092 42629341 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1379 5 521 AGC Kinase Gene Family AT2G20470 77.629 0.0 843
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Gso19g1379 Pkinase 2.7e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1379 K08790 - gmx:100805940 1087.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1379 19 42622092 42629341 Gso3g1384 3 39809308 39816363 GST
Gso19g1379 19 42622092 42629341 Gso10g0049 10 575594 588886 PCT
Gso10g0327 10 3504641 3513340 Gso19g1379 19 42622092 42629341 PCT