Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1375 ATGGGTCTGAGAGACATTGGTGCTTCACTGCCTCCTGGGTTTCGGTTTTATCCGAGTGATGAGGAATTGGTCTGCCATTACCTCTACAAAAAGATCGCAAATGAGGAAGTTCTGAAGGGTACCTTGGTCGAAATTGACCTCCACATATGCGAACCTTGGCAACTTCCAGAGGTGGCTAAGCTGAATGCGAATGAGTGGTACTTCTTCAGTTTCCGGGACCGCAAATATGCGACGGGGTTTCGGACCAACCGGGCAACTACATCGGGGTACTGGAAAGCAACGGGGAAGGATCGTACGGTGGTGGATCCAGCCACGCAAGAAGTTGTAGGGATGAGGAAAACACTGGTGTTCTACAGGAACAGAGCTCCAAATGGCATCAAAACCGGTTGGATCATGCATGAGTTCCGTTTGGAGACCCCACATATGCCTCCAAAGGAGGACTGGGTGTTGTGTAGAGTCTTCCACAAAAGCAAAGAAGATGACAACATGAGTTCCATACTCGTACAGTATGAGACAATTACACCACCTCCATCATCCCTAACTTTGGCTTCGTCATCTCCCACCAACCAAGCCATGCCTCATGGTGGGTATAATAACCGACTTGCCTCTTTCTCTAATTCCTCCATGTCAACCCACCAATATCATCATCACTTCAACCCTACCCAACAAAACGCTAATTCTTTGATGGATCTCCTCCACTTCTCTCGCGAAACCAACACCAACAATACCTTTCTTACTCAAATTGGTGCCAAAGGTGATGACGCATATGGTTTCTTATGGGACATGGATCTAACCGAAAATAGCCTAGAGGATGGCGTGGCTTCAAACTTGGACGCAATAAGATTCGAGGTTGATAATAATAACAATAATATGGTATTGCTATAA 885 0.4644 MGLRDIGASLPPGFRFYPSDEELVCHYLYKKIANEEVLKGTLVEIDLHICEPWQLPEVAKLNANEWYFFSFRDRKYATGFRTNRATTSGYWKATGKDRTVVDPATQEVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLETPHMPPKEDWVLCRVFHKSKEDDNMSSILVQYETITPPPSSLTLASSSPTNQAMPHGGYNNRLASFSNSSMSTHQYHHHFNPTQQNANSLMDLLHFSRETNTNNTFLTQIGAKGDDAYGFLWDMDLTENSLEDGVASNLDAIRFEVDNNNNNMVLL* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1375 294 SUPERFAMILY NAC domain 8 156 IPR036093 GO:0003677|GO:0006355
Gso19g1375 294 Pfam No apical meristem (NAM) protein 11 137 IPR003441 GO:0003677|GO:0006355
Gso19g1375 294 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 287 - -
Gso19g1375 294 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 287 - -
Gso19g1375 294 Gene3D NAC domain 19 161 IPR036093 GO:0003677|GO:0006355
Gso19g1375 294 ProSiteProfiles NAC domain profile. 10 156 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1375 Gso-Chr19 42562032 42570045 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1375 6 177 NAC Transcription Factor Family AT1G56010 54.348 3.63e-67 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso19g1375 NAM 2e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1375 - - gmx:100806284 604.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1375 19 42562032 42570045 Gso3g1380 3 39757747 39765164 GST
Gso19g1375 19 42562032 42570045 Gso10g0322 10 3445446 3451144 PCT
Gso10g0322 10 3445446 3451144 Gso19g1375 19 42562032 42570045 PCT