Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1374 ATGGAGTATGGAACAAAGCATTATGCTTTCCTCTTACTTGTGATTATGGAAGCAGATTATGGAAAGGATTGCACCAAATCTGAGAATAGAGAAAATCTTTCAGTTCCCCCTGGTTTTACGTCCCTGACATCTTTCATTTTGAAAAGGGATGGAAATGTTAAGAAAAGTGATAAATCTACAGCCTTTCAAATTGCATCCGAACAAGAGCCAATATTCATGGAGACTATTCCTGAGATGAATGACATTAGTGCTTATAGACAGGTTCTTATGCATCGGCCGTGGATAATCGCAGACCAGAGCAATCACCACAAACTTGAGGAATCTCACATAAAGCATCTTCCTATGGATCCCCCTTTAAATGATGGTCGTCCAAAAGGGATCATACATGGATGTCCAAACTGCAGTAATTGTGTGAAGGTAACAGCAAGGTGGCATCCTGAGGATGCTATAAGAGAAGTTTTGGAAGAAGCTCCTACTTTCCACCCAACAGAAGAGGAATTCAAAGACACACTTAAATATATTGCAAGCATACGTTCCAGAGCAGAACCTTATGGAATGTGCCGTATTGTCCCTCCTACTTGCTGGAAACCACCATGCTCTCTTGAGAAAAAGAACATATGGGAAAAGTCTGAATTTGTTGCTCAGATTCAGCGAATTGATGGACACCAACTTCAGCATGCACAAGAAATTATGGCTAGTGCTAGTGGAAATACAAAAACCAAGAGAAAAAGAGATGTAAAAGTAGCTTTAGACTCTCAGCTTGGTAATAGAAACACCAGCACTCCAAATAACCAGAATGTTCAAAAATGTGACTGTGAGTCTGAACCTGGTCCTAAATTCAGTCTCAAAACATTAAAGAAATATGCAGACATATTTAAGAGTCAGTACTTTGATTACAAGGATAAGAAGAAGATTATAGGTTCCAATATAAAATTAGCTATACATCAGCAGTGGGAACCATCTGTGGAGAATATTGAAGGTGAATATGGACGGATTGTTCAAAATCCAACTGAAGAAATCAAGGTGCTTTGTGTTAACACTTTGGAGGCCGGAGTTTTTAGCAGTGGATTTCCGACAGTTTCTGATCCTGTGGAGGCATACACTTACCCTGAATATTTGAAATCTGGATGGAACTTGAATAATATACTTTCACTCTCAGGATCCCTTCTTTGTTTTGAAAGCTCTGAAGCTTCACGTAATTTTGCCCCCAAGATTCACATGGGAATGTGCTTCTCTCCACTCAACTGGAAAGTTGAAGAGCACCACTTATACTCATTATATTACGTGCATTTGGGTGAACCAAAAGTGTGGTATGGCATCCCAGGAAAATTTGCTATTAACTTTGAAACAATTTGGAAGAAGTATCTCCCTGATTTGCAAGCAGGACAGCCTGATATGCATGATAATATGGTGATGCAGCTATCATGCTCCATATTGAAGGCAGAGGGCATTCCTGTATATCGTTGTATTCAGTATCCTCGTGAGTTTGTTCTTGTCTTTCCCGGGTCATATCATTCAGGATTTGATTGTGGCTTCAACTGTTCTGAAGCAGTAAGTTTTGCTCCTCTTGAGTGGCTGCTTCAGGGACAGAATGTTGTAGAGCTATACTGTGAACAGAGGAGAAAGACATTACTTTCATATGATAAGCTTTTGCTAGGAGCAGCAAGGGAAGCTGTGAGGGTCCAATGGGAAACTAATCTGTGCAGGAAGAGCACATCAGATAGCTTAACATATAAAGATGCCTATAAAAAAAATGGGTTCTTAATAAAAGCTTTGAACTCTCGCATCCAGAGTGAAAGTTTGAAGAGAAAATTTCTTTGCACTTCTTTGGTATCACAAAGAATGGATGAAAATTTTGATGCCACTTGTAAAAGGGAATGTAGTATTTGCCTCCGTGATTTACACTTGTCTGCTGTAGGTTGTTCATGTTCAGATAACTTTGCATGTCTTGATCATGCAAAACAGCTTTGTTCTTGCACTTGGAGCAACAAAACTCTCTTCTACCGTTATGAAATCAATAATTTGAATGTTCTTTGTCAAGCTTTGGATGGGAAATTAAGTGCAGTCTTTAAATGGGCTAAAGAGGATCTCGGATTAACTCTGAACTCTGTTGCCTCCAAGAGATCAAAACAAAGCTCAAAAAACATAATTGGTTCAACCCACCCTTCGCAAGATTTGCAGATGAATGAACCTGTATCGCAGACAGCATCAGATGAATCCTCAAAAGGGAAACAACGTCAATTGCTAGATATATTGAATTCATCAAAAACAAAAGAAAATGAAGTGGTTCCGAATTCATCAAAGAAAAAAAATGAGGTGGTTCCGAATTCATCAAAGAAACAAAATGCAGTCGTTTCCCAAGTTGTGCGGACTTTTGGTGGCACTCACAGTAGTTCTTATGACATTCGTTCAAAAATGAAGACAACTGTACTTCAGTCAACCTTTGCAGATGATAAGAAAGGAATCAATTCTGTTGGTGCCAAAATTGATACGAAGACACTTGGGCATAAGTTTACAATTTCAAAGGAAGTAGGAGATCCAAAAGTATCTAAAGTTCCTTCAGTTACAAACGCACGTTACTTGCCTTTTCTACAAGACAATGTGTTAGCTGATGTTTCATCTGATAGTTCGAGCACATCTATGTCGTCAGATTCTGAAGATGAAGATGTGCAAGTAGCTAATGGCTAA 2688 0.3899 MEYGTKHYAFLLLVIMEADYGKDCTKSENRENLSVPPGFTSLTSFILKRDGNVKKSDKSTAFQIASEQEPIFMETIPEMNDISAYRQVLMHRPWIIADQSNHHKLEESHIKHLPMDPPLNDGRPKGIIHGCPNCSNCVKVTARWHPEDAIREVLEEAPTFHPTEEEFKDTLKYIASIRSRAEPYGMCRIVPPTCWKPPCSLEKKNIWEKSEFVAQIQRIDGHQLQHAQEIMASASGNTKTKRKRDVKVALDSQLGNRNTSTPNNQNVQKCDCESEPGPKFSLKTLKKYADIFKSQYFDYKDKKKIIGSNIKLAIHQQWEPSVENIEGEYGRIVQNPTEEIKVLCVNTLEAGVFSSGFPTVSDPVEAYTYPEYLKSGWNLNNILSLSGSLLCFESSEASRNFAPKIHMGMCFSPLNWKVEEHHLYSLYYVHLGEPKVWYGIPGKFAINFETIWKKYLPDLQAGQPDMHDNMVMQLSCSILKAEGIPVYRCIQYPREFVLVFPGSYHSGFDCGFNCSEAVSFAPLEWLLQGQNVVELYCEQRRKTLLSYDKLLLGAAREAVRVQWETNLCRKSTSDSLTYKDAYKKNGFLIKALNSRIQSESLKRKFLCTSLVSQRMDENFDATCKRECSICLRDLHLSAVGCSCSDNFACLDHAKQLCSCTWSNKTLFYRYEINNLNVLCQALDGKLSAVFKWAKEDLGLTLNSVASKRSKQSSKNIIGSTHPSQDLQMNEPVSQTASDESSKGKQRQLLDILNSSKTKENEVVPNSSKKKNEVVPNSSKKQNAVVSQVVRTFGGTHSSSYDIRSKMKTTVLQSTFADDKKGINSVGAKIDTKTLGHKFTISKEVGDPKVSKVPSVTNARYLPFLQDNVLADVSSDSSSTSMSSDSEDEDVQVANG* 896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1374 895 MobiDBLite consensus disorder prediction 711 781 - -
Gso19g1374 895 PANTHER INACTIVE LYSINE-SPECIFIC DEMETHYLASE JMJ19-RELATED 96 779 - -
Gso19g1374 895 Gene3D Cupin 142 521 - -
Gso19g1374 895 SMART cupin_9 371 537 IPR003347 -
Gso19g1374 895 ProSiteProfiles JmjN domain profile. 157 198 IPR003349 -
Gso19g1374 895 PANTHER LYSINE-SPECIFIC DEMETHYLASE 96 779 - -
Gso19g1374 895 Pfam JmjC domain, hydroxylase 406 520 IPR003347 -
Gso19g1374 895 Pfam C5HC2 zinc finger 627 676 IPR004198 -
Gso19g1374 895 Pfam jmjN domain 158 191 IPR003349 -
Gso19g1374 895 ProSiteProfiles JmjC domain profile. 371 537 IPR003347 -
Gso19g1374 895 MobiDBLite consensus disorder prediction 252 271 - -
Gso19g1374 895 SMART JmjN_1 156 197 IPR003349 -
Gso19g1374 895 MobiDBLite consensus disorder prediction 233 272 - -
Gso19g1374 895 SUPERFAMILY Clavaminate synthase-like 368 564 - -
Gso19g1374 895 MobiDBLite consensus disorder prediction 872 895 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1374 Gso-Chr19 42548846 42556807 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1374 16 706 JUMONJI Transcription Factor Family AT1G08620 45.775 0.0 595
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Gso19g1374 JmjC 2.3e-31 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1374 - - gmx:100804864 1803.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1374 19 42548846 42556807 Gso3g1379 3 39744533 39751155 GST