Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1371 ATGCATATAGCAGGTCAAATAAATACATCTTCAGTGAAATGTCTTGTCAACAGCATTTCTCGATTCATGCATCTAGTTTGTTGTCAAGCAGTGAAACCTATGCCCCTTCAGAAGAACTGTAATAATATGGTTGGTGTGTTAAAGCGGTTGAAACCAGTGCTCGATGATATTGTGGATTTCAAAATCCCTTTGGATGAAAATTTGCATAGAGAATGTGAAGAATTGGATATGCAGGTTAATGAAGCTAGGGAGTTCATTGAAAAATTGGGCCCAAAGATGAGCAGGATTCACAGTGTTCTTCAAAGTGGGGAATTGTTGATCAAGTTACAGAACTCTTCATATAAGATTTGTCACATGATAGTTAAATCCCTAAAGGCACCTGCATCTGTTTTGGTTTTGGGTAATCTTCAGCAATATATGCAGGAACTTCAGTGTCTTAAGAAGGAACCTGCAATGGTCTATATAGAAGAAGCACTGAGAAATCAAAGGGACAATATTGAACCTTGCTATGATTCTCTAAAGGAAATTATAGGGTTACTCAAATTGACGTCAAACCAGGAGCTCCTGAAAGAAAGTATTGCTGTGGAAAAGGAAAGGTCAAATGCTGAAGTCAATAAAACAAAAGGGAACCTGGATGAAATTAACCAAATTGTGAATCTTGTGTGCAATTTGCGTGATTATGTGATGAAATTTGAGTGCCCTGAAGTCAAAAGTGGTGTTTCAATTCCCCCATATTTTCGATGTCCTTTATCATTAGAACTCATGTCAGATCCTGTTATTGTGGCTTCAGGTCAAACATATGAAAGGCAATCCATTCAAAAGTGGCTTGATCATGGGCTAACTGTTTGTCCCAACACTCATCACAGACTTGTCCATACAAATCTCATTCCCAATTATACTGTTAAAGCTATGATAGCAAATTGGTGTGAGGAAAATAATGTCAAACTTCCCTGTAACTCTAAGCAAAGTAATTCAACTCGTATTTCATCCCCCTCAGATCATTTATTACATCAAGATTTAGATCGTCAGTGTAGCTTTCAGTCTTCAGATAGTAGCAATTCCTATTCAAATCAAACTGCAAATGCATTTGAGAAGCAAAAGGATGATAACTCTTTTGGATCAGGCAGGGGATCCCATAGAAGCCGGAATGGACAGACAGAAAAGTTTGAGCAACAATCCCCTGCACCTTCATGTAGTAACCGCAGAAGTGAATCATTTTCAAGTTCTATTTCTAGTACTGATTATGTACTTCCTGTTTCAAAAGAGGTGTCAGTCATATCCAATAAGCATCACAATGTGGAGTTGTCTGGAGAGATTACTAATGGGTGTCCTGCTTCTCCTGCATATAAAGAATCAGTGATTTATCCTTGGTTATCTGGAAAGCAATTTCATAGCCCTGGATCAAAAATTGGAAGGATGGAGGATGAAAATAAGTATGAGAGTAACAATAATATTATTACTAGTCATTCAAAAGTTGCTTCCCATCCTGTTTCCAACTTAGGATCTGATGAATTGATCACCACATCCCATGTCCATGAGTTGATTGAAGATCTCCAGAGTCAATCGAATGAAACACGAACTGCTGCTGCAGAACAATTGAGGTTCTGTACCAAGCATAACATGGAGAACCGCATCATTGTAGGGCAGTGTGGGGCTATTATGCCTTTACTTTCACTGCTATATTCAGACATGAAGATAACACAAGAGCATGCTGTGACAGCTCTACTGAATTTGTCAATCAATGAAGGAAACAAGGCCTTGATTATGGAAGCAGGGGCCATAGAACCACTTATCCATCTTTTGGAGAAAGGGAATGATGGTGCAAAGGAGAATTCTGCTGCTGCTCTGTTCAGCCTCTCTGTAATAGATAACAATAAGGCAAAAATTGGCCGTTCTGGTGCTGTTAAAGCTTTGGTGGGTCTTCTAGCCTCAGGAACTCTTAGGGGAAAGAAGGATGCTGCCACTGCTTTATTCAACCTATCAATATTCCATGAGAATAAAGCTCGTATAGTTCAAGCTGGAGCCGTGAAGTTTCTGGTTCTGCTATTGGATCCTACTGATAAAATGGTTGACAAGGCTGTTGCTCTTTTGGCAAACCTGTCAACAATTGCAGAGGGCCGAATAGAAATTGCAAGGGAAGGGGGCATTCCCTCACTTGTTGAAATTGTTGAATCAGGTTCTCAGAGGGGAAAGGAAAATGCTGCTTCCATCCTCTTGCAAATGTGTCTTCATAGTCAAAAGTTTTGTACCCTGGTTCTCCAAGAAGGAGCTGTACCTCCCCTAGTTGCATTATCTCAGTCCGGTACTCCAAGAGCTAAGGAAAAGATGCAGGCACAACAGCTTCTGAGTCATTTTCGTAATCAGCGTGAAGGAGCCACGGGGAAGGGGAAATCATGA 2397 0.4013 MHIAGQINTSSVKCLVNSISRFMHLVCCQAVKPMPLQKNCNNMVGVLKRLKPVLDDIVDFKIPLDENLHRECEELDMQVNEAREFIEKLGPKMSRIHSVLQSGELLIKLQNSSYKICHMIVKSLKAPASVLVLGNLQQYMQELQCLKKEPAMVYIEEALRNQRDNIEPCYDSLKEIIGLLKLTSNQELLKESIAVEKERSNAEVNKTKGNLDEINQIVNLVCNLRDYVMKFECPEVKSGVSIPPYFRCPLSLELMSDPVIVASGQTYERQSIQKWLDHGLTVCPNTHHRLVHTNLIPNYTVKAMIANWCEENNVKLPCNSKQSNSTRISSPSDHLLHQDLDRQCSFQSSDSSNSYSNQTANAFEKQKDDNSFGSGRGSHRSRNGQTEKFEQQSPAPSCSNRRSESFSSSISSTDYVLPVSKEVSVISNKHHNVELSGEITNGCPASPAYKESVIYPWLSGKQFHSPGSKIGRMEDENKYESNNNIITSHSKVASHPVSNLGSDELITTSHVHELIEDLQSQSNETRTAAAEQLRFCTKHNMENRIIVGQCGAIMPLLSLLYSDMKITQEHAVTALLNLSINEGNKALIMEAGAIEPLIHLLEKGNDGAKENSAAALFSLSVIDNNKAKIGRSGAVKALVGLLASGTLRGKKDAATALFNLSIFHENKARIVQAGAVKFLVLLLDPTDKMVDKAVALLANLSTIAEGRIEIAREGGIPSLVEIVESGSQRGKENAASILLQMCLHSQKFCTLVLQEGAVPPLVALSQSGTPRAKEKMQAQQLLSHFRNQREGATGKGKS* 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1371 798 MobiDBLite consensus disorder prediction 364 406 - -
Gso19g1371 798 MobiDBLite consensus disorder prediction 773 787 - -
Gso19g1371 798 MobiDBLite consensus disorder prediction 387 406 - -
Gso19g1371 798 Gene3D - 475 792 IPR011989 -
Gso19g1371 798 SUPERFAMILY ARM repeat 504 775 IPR016024 -
Gso19g1371 798 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 3 12 793 - -
Gso19g1371 798 CDD RING-Ubox_PUB 246 287 IPR045210 -
Gso19g1371 798 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 241 316 IPR013083 -
Gso19g1371 798 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 633 675 IPR000225 GO:0005515
Gso19g1371 798 SMART arm_5 663 702 IPR000225 GO:0005515
Gso19g1371 798 SMART arm_5 581 621 IPR000225 GO:0005515
Gso19g1371 798 SMART arm_5 622 662 IPR000225 GO:0005515
Gso19g1371 798 SMART arm_5 540 580 IPR000225 GO:0005515
Gso19g1371 798 SMART arm_5 703 743 IPR000225 GO:0005515
Gso19g1371 798 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 551 593 IPR000225 GO:0005515
Gso19g1371 798 ProSiteProfiles U-box domain profile. 241 315 IPR003613 GO:0004842|GO:0016567
Gso19g1371 798 SUPERFAMILY RING/U-box 240 315 - -
Gso19g1371 798 MobiDBLite consensus disorder prediction 773 798 - -
Gso19g1371 798 Pfam U-box domain 242 313 IPR003613 GO:0004842|GO:0016567
Gso19g1371 798 SMART Ubox_2 245 308 IPR003613 GO:0004842|GO:0016567
Gso19g1371 798 PANTHER U BOX DOMAIN-CONTAINING 12 793 - -
Gso19g1371 798 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 592 634 IPR000225 GO:0005515
Gso19g1371 798 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 674 715 IPR000225 GO:0005515
Gso19g1371 798 Coils Coil 185 205 - -
Gso19g1371 798 Pfam Armadillo/beta-catenin-like repeat 624 661 IPR000225 GO:0005515
Gso19g1371 798 Pfam Armadillo/beta-catenin-like repeat 581 620 IPR000225 GO:0005515
Gso19g1371 798 Pfam Armadillo/beta-catenin-like repeat 542 579 IPR000225 GO:0005515
Gso19g1371 798 MobiDBLite consensus disorder prediction 369 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1371 Gso-Chr19 42502618 42507620 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1371 12 798 U-box Gene Family AT3G54790 51.317 0.0 689
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1371 - - gmx:100804684 1530.77