Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1366 ATGGGGAGAGCTCCATGCTGTGAGAAAATGGGGTTGAAGAGAGGGCCATGGACTCCAGAAGAAGATCAAATTCTCATCAATTACATCAACACTTATGGCCATGCTAATTGGCGTGCACTGCCCAAACTAGCTGGGCTATTAAGGTGTGGAAAGAGTTGTAGACTCCGGTGGATAAATTATCTGAGACCGGACATCAAACGGGGCAACTTTACCAGAGAAGAAGAGGACACTATAATCAGTTTGCATGAAATGTTGGGAAACAGATGGTCGGCTATTGCGGCAAGGTTGTCAGGGAGAACAGACAACGAGATAAAAAACGTGTGGCACACCCACTTGAAGAAGAGGCTGCCACAAAATTACCAACAAAGCCATCACACTAAAAAACGAAGCAAAAAACAACCACCAAAGTTGGATGCGGACGCCTCCAAATCCAACCAAGACGCCAAACTAGAACAACAAGACCCCGTTAATATTCATGGATCGAACTCTGAGGACATGATGATGCCACTATCTCCTCCTCATTGTTCTAGCGACATGTCCTCCTCCCTCACCACCAGTGACAACAATAGTAACGTTAATATTATTAATAATAATCATGATATGTCCTTAAATGTTAATGATTATGATATTGACACCCCAGAGAATAATCTTGCATTGGACGAGGATTTCTGGTCGGAAGTTTTGTCATCTGATAATTCCGGCGTGACAAGCGGATTTCCGACCCTTGACTATGATCAGTTTCAACCAATGTCTCCTCTAGTGACAGAAGAAGGGGTCCTTATAGATTGTTCGTCGAGTACGTGCGACGATGGCATGGATTTTTGGTGCAATGTTTACTCGAGAGCTGAGGAATTTACCCAGTTACTGGAATTGTGA 876 0.4384 MGRAPCCEKMGLKRGPWTPEEDQILINYINTYGHANWRALPKLAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIISLHEMLGNRWSAIAARLSGRTDNEIKNVWHTHLKKRLPQNYQQSHHTKKRSKKQPPKLDADASKSNQDAKLEQQDPVNIHGSNSEDMMMPLSPPHCSSDMSSSLTTSDNNSNVNIINNNHDMSLNVNDYDIDTPENNLALDEDFWSEVLSSDNSGVTSGFPTLDYDQFQPMSPLVTEEGVLIDCSSSTCDDGMDFWCNVYSRAEEFTQLLEL* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1366 291 MobiDBLite consensus disorder prediction 133 147 - -
Gso19g1366 291 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gso19g1366 291 CDD SANT 69 112 IPR001005 -
Gso19g1366 291 Gene3D - 69 145 - -
Gso19g1366 291 PANTHER MYB-RELATED TRANSCRIPTION FACTOR LBM1 1 285 - -
Gso19g1366 291 CDD SANT 16 61 IPR001005 -
Gso19g1366 291 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 285 - -
Gso19g1366 291 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Gso19g1366 291 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Gso19g1366 291 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gso19g1366 291 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gso19g1366 291 Gene3D - 11 67 - -
Gso19g1366 291 SMART sant 66 114 IPR001005 -
Gso19g1366 291 SMART sant 13 63 IPR001005 -
Gso19g1366 291 MobiDBLite consensus disorder prediction 118 132 - -
Gso19g1366 291 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gso19g1366 291 MobiDBLite consensus disorder prediction 112 169 - -
Gso19g1366 291 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1366 Gso-Chr19 42462507 42464728 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1366 1 291 MYB Transcription Factor Family AT2G31180 49.835 3.96e-84 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso19g1366 Myb_DNA-binding 1.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1366 K09422 - gmx:100802214 575.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1366 19 42462507 42464728 Gso3g1371 3 39651879 39653848 GST
Gso19g1366 19 42462507 42464728 Gso2g0050 2 597059 599391 PCT
Gso19g1366 19 42462507 42464728 Gso10g0059 10 658173 660462 PCT
Gso10g0313 10 3331217 3334175 Gso19g1366 19 42462507 42464728 PCT