Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gso19g1362 | ATGGATTTAGACTTCGATTCCACTTTTTTCTTGAACCAAAACCTTAGCTTCTTCTCAGAAAACTCCTCTGTTTGTGGAGACCCTTTTTCTTGGGACAACAACTTTGTCTTGGATGATATCTTCAACTTGAGCGACAATTCGTCACAATCACAAACCAAGGAAACATCCTCGGCGTCCAATGTTTCCAGTTCTATTGGTAGCGTCGAGTTACAAGAAGTCTCATCCAACACGACTTATGAAGAAGTGAAAGAAGGACAATCAGTATCATTATCATTGTCGTCATCATCATCGTCACTACCGTTGCTGCCTTCGCAACAAGCGAAGGAGCAAAAGATGTACAGAGGAGTGAGGAAGAGGCCGTGGGGGAAATTCGCGGCCGAGATAAGGGATTCCACTCGAAACGGCGTTCGAGTGTGGATTGGAACCTTTGACACAGCCGAAGCCGCAGCTCTGGCTTACGACCAAGCCGCGTTCTCCACGAGAGGGTCTCTCGCGGTGTTGAATTTCCCAGAGGAAGTGGTGAGTGAGTCCCTCAAAGACATGCCAAGTAAGCCATGGGAAGAAGGTTCCTCCCCTGTTTTGGCTCTTAAGAGAAAACACACTATGAGGAGAAAGTCCAATTCTAAGAAGAAGAGCAAGATTGATCAGAGGGAACAATTAGATTTCAGCAGCAGTTCGCAAAATGTGCTGGTGTTCGAGGATTTGGGTGCTGAGTACCTAGAACAGCTCTTGAGTTTGACTTCTTAG | 747 | 0.4632 | MDLDFDSTFFLNQNLSFFSENSSVCGDPFSWDNNFVLDDIFNLSDNSSQSQTKETSSASNVSSSIGSVELQEVSSNTTYEEVKEGQSVSLSLSSSSSSLPLLPSQQAKEQKMYRGVRKRPWGKFAAEIRDSTRNGVRVWIGTFDTAEAAALAYDQAAFSTRGSLAVLNFPEEVVSESLKDMPSKPWEEGSSPVLALKRKHTMRRKSNSKKKSKIDQREQLDFSSSSQNVLVFEDLGAEYLEQLLSLTS* | 249 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gso19g1362 | 248 | MobiDBLite | consensus disorder prediction | 199 | 225 | - | - | |
Gso19g1362 | 248 | Pfam | AP2 domain | 113 | 162 | IPR001471 | GO:0003700|GO:0006355 | |
Gso19g1362 | 248 | PRINTS | Ethylene responsive element binding protein signature | 113 | 124 | IPR001471 | GO:0003700|GO:0006355 | |
Gso19g1362 | 248 | PRINTS | Ethylene responsive element binding protein signature | 136 | 152 | IPR001471 | GO:0003700|GO:0006355 | |
Gso19g1362 | 248 | SUPERFAMILY | DNA-binding domain | 112 | 171 | IPR016177 | GO:0003677 | |
Gso19g1362 | 248 | ProSiteProfiles | AP2/ERF domain profile. | 112 | 170 | IPR001471 | GO:0003700|GO:0006355 | |
Gso19g1362 | 248 | CDD | AP2 | 113 | 171 | IPR001471 | GO:0003700|GO:0006355 | |
Gso19g1362 | 248 | PANTHER | AP2 DOMAIN CLASS TRANSCRIPTION FACTOR | 13 | 245 | - | - | |
Gso19g1362 | 248 | SMART | rav1_2 | 112 | 176 | IPR001471 | GO:0003700|GO:0006355 | |
Gso19g1362 | 248 | Gene3D | AP2/ERF domain | 111 | 172 | IPR036955 | GO:0003700|GO:0006355 | |
Gso19g1362 | 248 | PANTHER | DNA-BINDING DOMAIN | 13 | 245 | IPR044808 | GO:0003700|GO:0009873 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gso19g1362 | Gso-Chr19 | 42414451 | 42415510 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gso19g1362 | 92 | 244 | AP2-EREBP Transcription Factor Family | AT3G23240 | 59.615 | 1.45e-56 | 178 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | AP2/ERF-ERF | Gso19g1362 | AP2 | 4.4e-13 | CL0081 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gso19g1362 | K14516 | - | gmx:100801682 | 441.425 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Gso19g1362 | 19 | 42414451 | 42415510 | Gso3g1367 | 3 | 39604848 | 39605810 | GST | |
Gso19g1362 | 19 | 42414451 | 42415510 | Gso10g0309 | 10 | 3304216 | 3305418 | PCT | |
Gso10g0309 | 10 | 3304216 | 3305418 | Gso19g1362 | 19 | 42414451 | 42415510 | PCT |