Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1362 ATGGATTTAGACTTCGATTCCACTTTTTTCTTGAACCAAAACCTTAGCTTCTTCTCAGAAAACTCCTCTGTTTGTGGAGACCCTTTTTCTTGGGACAACAACTTTGTCTTGGATGATATCTTCAACTTGAGCGACAATTCGTCACAATCACAAACCAAGGAAACATCCTCGGCGTCCAATGTTTCCAGTTCTATTGGTAGCGTCGAGTTACAAGAAGTCTCATCCAACACGACTTATGAAGAAGTGAAAGAAGGACAATCAGTATCATTATCATTGTCGTCATCATCATCGTCACTACCGTTGCTGCCTTCGCAACAAGCGAAGGAGCAAAAGATGTACAGAGGAGTGAGGAAGAGGCCGTGGGGGAAATTCGCGGCCGAGATAAGGGATTCCACTCGAAACGGCGTTCGAGTGTGGATTGGAACCTTTGACACAGCCGAAGCCGCAGCTCTGGCTTACGACCAAGCCGCGTTCTCCACGAGAGGGTCTCTCGCGGTGTTGAATTTCCCAGAGGAAGTGGTGAGTGAGTCCCTCAAAGACATGCCAAGTAAGCCATGGGAAGAAGGTTCCTCCCCTGTTTTGGCTCTTAAGAGAAAACACACTATGAGGAGAAAGTCCAATTCTAAGAAGAAGAGCAAGATTGATCAGAGGGAACAATTAGATTTCAGCAGCAGTTCGCAAAATGTGCTGGTGTTCGAGGATTTGGGTGCTGAGTACCTAGAACAGCTCTTGAGTTTGACTTCTTAG 747 0.4632 MDLDFDSTFFLNQNLSFFSENSSVCGDPFSWDNNFVLDDIFNLSDNSSQSQTKETSSASNVSSSIGSVELQEVSSNTTYEEVKEGQSVSLSLSSSSSSLPLLPSQQAKEQKMYRGVRKRPWGKFAAEIRDSTRNGVRVWIGTFDTAEAAALAYDQAAFSTRGSLAVLNFPEEVVSESLKDMPSKPWEEGSSPVLALKRKHTMRRKSNSKKKSKIDQREQLDFSSSSQNVLVFEDLGAEYLEQLLSLTS* 249
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1362 248 MobiDBLite consensus disorder prediction 199 225 - -
Gso19g1362 248 Pfam AP2 domain 113 162 IPR001471 GO:0003700|GO:0006355
Gso19g1362 248 PRINTS Ethylene responsive element binding protein signature 113 124 IPR001471 GO:0003700|GO:0006355
Gso19g1362 248 PRINTS Ethylene responsive element binding protein signature 136 152 IPR001471 GO:0003700|GO:0006355
Gso19g1362 248 SUPERFAMILY DNA-binding domain 112 171 IPR016177 GO:0003677
Gso19g1362 248 ProSiteProfiles AP2/ERF domain profile. 112 170 IPR001471 GO:0003700|GO:0006355
Gso19g1362 248 CDD AP2 113 171 IPR001471 GO:0003700|GO:0006355
Gso19g1362 248 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 13 245 - -
Gso19g1362 248 SMART rav1_2 112 176 IPR001471 GO:0003700|GO:0006355
Gso19g1362 248 Gene3D AP2/ERF domain 111 172 IPR036955 GO:0003700|GO:0006355
Gso19g1362 248 PANTHER DNA-BINDING DOMAIN 13 245 IPR044808 GO:0003700|GO:0009873
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Gso19g1362 Gso-Chr19 42414451 42415510 Dispersed/Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1362 92 244 AP2-EREBP Transcription Factor Family AT3G23240 59.615 1.45e-56 178
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso19g1362 AP2 4.4e-13 CL0081
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1362 K14516 - gmx:100801682 441.425
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1362 19 42414451 42415510 Gso3g1367 3 39604848 39605810 GST
Gso19g1362 19 42414451 42415510 Gso10g0309 10 3304216 3305418 PCT
Gso10g0309 10 3304216 3305418 Gso19g1362 19 42414451 42415510 PCT