Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1360 ATGAGTTCCCCTTTCTTTCAGCATGCAGATTGGGGCATGTTGAAGGAGCCTAATTCGGATATTTTGTTTGAATCATTTTCAAGCAAAGGAGTTGATCATGACCCTTTCCATGATTGTCTTTCCTTTGATATGATTGATAACTCAAGGGATCCACAGGAAGAAAGTCATCATCAAGTGATTGAAGAAGCTATGAAAACAAAGAAGAAGTCTTATATTGGGGTAAGAAGAAGGCCATGGGGAAGATTTGCAGCGGAGATCAGAGACACAACAAGGAAGGGTATAAGGGTTTGGCTTGGAACGTTTGATAGTGCTGAGGAAGCTGCATTGGCTTATGACCAGGCTGCATTTTCCATGAGAGGCTCTAGTGCAGTGCTGAATTTTCCGGTCAAAAGGGTCAAAGAGTCTTTACAAGAGATGAACTATTCTGGTTGCAGCCGAGGGTGCTCTCCTGCATTAGAACTCAAAGAGAGGCACAACATAAGAAGAAAATTGTCGTCATCATCAAAGGCTAAGACAAGTAAAAGGAAACAGGACTTGGAGGAATCCAGTGTTGTGGTGCTGGAGGACTTAGGAGCTGATTATCTGGAGGCACTTCTTAGCACATCGGCGGATCAAAGTGCAACAAGCTCTACCTGCTAA 639 0.4351 MSSPFFQHADWGMLKEPNSDILFESFSSKGVDHDPFHDCLSFDMIDNSRDPQEESHHQVIEEAMKTKKKSYIGVRRRPWGRFAAEIRDTTRKGIRVWLGTFDSAEEAALAYDQAAFSMRGSSAVLNFPVKRVKESLQEMNYSGCSRGCSPALELKERHNIRRKLSSSSKAKTSKRKQDLEESSVVVLEDLGADYLEALLSTSADQSATSSTC* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1360 212 CDD AP2 69 129 IPR001471 GO:0003700|GO:0006355
Gso19g1360 212 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 27 201 - -
Gso19g1360 212 PRINTS Ethylene responsive element binding protein signature 71 82 IPR001471 GO:0003700|GO:0006355
Gso19g1360 212 PRINTS Ethylene responsive element binding protein signature 94 110 IPR001471 GO:0003700|GO:0006355
Gso19g1360 212 SUPERFAMILY DNA-binding domain 70 129 IPR016177 GO:0003677
Gso19g1360 212 PANTHER DNA-BINDING DOMAIN 27 201 IPR044808 GO:0003700|GO:0009873
Gso19g1360 212 Pfam AP2 domain 70 120 IPR001471 GO:0003700|GO:0006355
Gso19g1360 212 Gene3D AP2/ERF domain 69 130 IPR036955 GO:0003700|GO:0006355
Gso19g1360 212 MobiDBLite consensus disorder prediction 162 181 - -
Gso19g1360 212 SMART rav1_2 70 134 IPR001471 GO:0003700|GO:0006355
Gso19g1360 212 ProSiteProfiles AP2/ERF domain profile. 70 128 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1360 Gso-Chr19 42381286 42382139 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1360 65 204 AP2-EREBP Transcription Factor Family AT3G23240 58.571 4.35e-54 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso19g1360 AP2 1.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1360 K14516 - gmx:100800600 385.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1360 19 42381286 42382139 Gso10g0306 10 3260339 3261161 PCT
Gso10g0306 10 3260339 3261161 Gso19g1360 19 42381286 42382139 PCT