Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1359 ATGGAGGATTTAAAGGAAAAGGTCAATGAAGGGGAACCAACGCAAATTAAGTATAGAGGAGTACGTAGGAGACCATGGGGAAAATTTGCTGCAGAAATTAGAGATTCAGCTAGACATGGTGCTCGTGTGTGGCTCGGGACATTTAACACTGCTGAGGAGGCCGCAAGAGCTTATGATCGTGCTGCCTTTGAGATGAGAGGTGCTACGGCCATTCTCAACTTCCCAGATGAACACCCTCCTTGCAATGTGACTTCTCTTAGCAAGAAGTCCTCATCATCTAACACTGAGATTGGTAAACAAGTTGTGGTATTTGAGTGCTTGGATGACAAATTGTTAGAGGAACTCCTTGATTGTGATGGGGAAAACCATCAATGA 375 0.4453 MEDLKEKVNEGEPTQIKYRGVRRRPWGKFAAEIRDSARHGARVWLGTFNTAEEAARAYDRAAFEMRGATAILNFPDEHPPCNVTSLSKKSSSSNTEIGKQVVVFECLDDKLLEELLDCDGENHQ* 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1359 124 CDD AP2 17 76 IPR001471 GO:0003700|GO:0006355
Gso19g1359 124 PANTHER DNA-BINDING DOMAIN 8 89 IPR044808 GO:0003700|GO:0009873
Gso19g1359 124 SUPERFAMILY DNA-binding domain 17 77 IPR016177 GO:0003677
Gso19g1359 124 Gene3D AP2/ERF domain 16 76 IPR036955 GO:0003700|GO:0006355
Gso19g1359 124 PANTHER PATHOGENESIS-RELATED GENES TRANSCRIPTIONAL ACTIVATOR PTI5 8 89 - -
Gso19g1359 124 SMART rav1_2 17 81 IPR001471 GO:0003700|GO:0006355
Gso19g1359 124 ProSiteProfiles AP2/ERF domain profile. 17 75 IPR001471 GO:0003700|GO:0006355
Gso19g1359 124 Pfam AP2 domain 17 67 IPR001471 GO:0003700|GO:0006355
Gso19g1359 124 PRINTS Ethylene responsive element binding protein signature 18 29 IPR001471 GO:0003700|GO:0006355
Gso19g1359 124 PRINTS Ethylene responsive element binding protein signature 41 57 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1359 Gso-Chr19 42368383 42369097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1359 15 119 AP2-EREBP Transcription Factor Family AT3G23230 59.664 5.16e-40 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso19g1359 AP2 1.7e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1359 - - gmx:100800069 232.646
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1359 19 42368383 42369097 Gso3g1364 3 39572961 39573269 GST
Gso10g0304 10 3252973 3253624 Gso19g1359 19 42368383 42369097 PCT