Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1355 ATGACTGGTTCTGGTTCTCCTTGTGGAGCCTGCAAGTTCTTGAGAAGGAAATGTGTGAGAGGTTGTGTTTTTGCACCTTACTTTTGTCATGAACAGGGTTCCACTCATTTTGCAGCCATTCATAAGGTCTTTGGTGCAAGCAATGTCTCAAAGCACCTTGCTCACCTCCCTGTGAGTGACCGTTGTGAAGCTGCAGTCACAATCTCTTATGAAGCTCAAGCTAGACTTCAGGATCCAATTTATGGCTGTGTTGCTCATATTTTTGCACTCCAACAACAGGTGGTGAGTTTACAAGCACAGCTAGTTTATCTCAGGGAACAAGCAAGTCAGATCTATCTCAATGGCTCTGCCACTGAAAACCCTAATGAGAAATACCTTGGAAAACCTACTACTTTCCCTCAAGATCTACAAAGTTGGTTCCAGATGGAAAATTCCAACTTGGCTTCACAATTTCTCCCTAACTTGTCCACCAATCCTTCAACACAGTATTATGGGAATACTAATACTCTCGTGGAACCAAACCCTATTGGAAATTATGAAAATTCAGGAACCGTAGAAGAAAGTATCTCATTTTCTAGCTTTAAAGAGAGTTGTAACTCTATGTCCTATGACATGCAAAGGCAGTGA 627 0.4179 MTGSGSPCGACKFLRRKCVRGCVFAPYFCHEQGSTHFAAIHKVFGASNVSKHLAHLPVSDRCEAAVTISYEAQARLQDPIYGCVAHIFALQQQVVSLQAQLVYLREQASQIYLNGSATENPNEKYLGKPTTFPQDLQSWFQMENSNLASQFLPNLSTNPSTQYYGNTNTLVEPNPIGNYENSGTVEESISFSSFKESCNSMSYDMQRQ* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1355 208 PANTHER LOB DOMAIN-CONTAINING PROTEIN-RELATED 1 206 - -
Gso19g1355 208 ProSiteProfiles LOB domain profile. 6 108 IPR004883 -
Gso19g1355 208 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 206 - -
Gso19g1355 208 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1355 Gso-Chr19 42292456 42293655 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1355 7 133 AS2 family AT3G58190 74.419 3.05e-68 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gso19g1355 LOB 3.5e-35 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1355 19 42292456 42293655 Gso3g1359 3 39512847 39514021 GST
Gso19g1355 19 42292456 42293655 Gso10g0295 10 3156177 3157728 PCT
Gso10g0295 10 3156177 3157728 Gso19g1355 19 42292456 42293655 PCT