Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1354 ATGGCTTCTGCTAGTGGAAATGGTGGCTCTAATGGCACTGGCTCTCCTTGCGGGGCATGCAAGTTCCTCAGAAGAAAGTGTGCTGCTGATTGCATCTTTGCACCTTACTTTTGCTCAGAACAAGGTCCTGCTAGATTTGCAGCCATACACAAGGTCTTTGGTGCCAGCAACGTTTCCAAGTTGCTTTTGCATATACCAGCTCATGATCGTTGTGAAGCCGTTGTCACAATCGCTTATGAGGCTCAGGCTCGTATCAGAGACCCTGTCTATGGCTGTGTCTCTCACATTTTTGCCTTACAACAACAGGTGGCATGCTTGCAGGCACAGCTGATGCAGGTGAAGGCTCAGCTGGCTCAGAACCTGGTGGAGTCCAGGAACATAGAGAGCAATCATCAGTGGACAGGGAATAATAACAGTGTTTCAGGACAACCAATGAACCATCCATTTTGTCCCACTTACATGAATCCTATATCTCCTCAAAGCTCTCTTGAGTCAATTGATCACAGCAGCATCAATGATGGAATGAGCATGCAAGATATACAAAGCAGAGAGGATTTCCAAATCCAAGCTAAAGAAAGACCATACAACAACAATGACTTGGGGGAGCTGCAAGAACTGGCACTCAGGATGATGAGGAACTGA 642 0.4673 MASASGNGGSNGTGSPCGACKFLRRKCAADCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLLHIPAHDRCEAVVTIAYEAQARIRDPVYGCVSHIFALQQQVACLQAQLMQVKAQLAQNLVESRNIESNHQWTGNNNSVSGQPMNHPFCPTYMNPISPQSSLESIDHSSINDGMSMQDIQSREDFQIQAKERPYNNNDLGELQELALRMMRN* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1354 213 Pfam Lateral organ boundaries (LOB) domain 16 114 IPR004883 -
Gso19g1354 213 Coils Coil 96 116 - -
Gso19g1354 213 PANTHER LOB DOMAIN-CONTAINING PROTEIN 16 1 212 - -
Gso19g1354 213 ProSiteProfiles LOB domain profile. 15 117 IPR004883 -
Gso19g1354 213 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1354 Gso-Chr19 42281238 42282982 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1354 3 213 AS2 family AT2G42430 57.143 2.19e-81 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gso19g1354 LOB 8.3e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1354 K13944 - gmx:100801508 425.631
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1354 19 42281238 42282982 Gso3g1358 3 39491504 39493971 GST
Gso19g1354 19 42281238 42282982 Gso10g0294 10 3147080 3148742 PCT
Gso10g0294 10 3147080 3148742 Gso19g1354 19 42281238 42282982 PCT