Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1352 ATGGACTTAAACTACCCAGAAGAGTGCTACTCCAAGAGCTCCTGCGAAGAAACCAACGATGATATGGGAATTGGAAGATCCTATGAGTGCATCTTTTGCAAGAGAGGCTTCACCACAGCACAAGCCTTAGGTGGACACATGAACATACACAGAAAAGAAAGAGCCAACAAGACCAAAGCCAGTTTCTCTTCTCATCCTTCAAGTTCAAACAACGTTGATGGCATCAACAACTATGCAGATCTCGGGTTCTATTCACAGATTCCAAGCCTCTCCACTGCTCCTGATGCTAATAGCTACCGTGAAGTTTTCTTTCCTACCGCTGCACCAAGTGTTATTAGGCCTTCTTCCCATGAGGTTTTGTGTGTAGAAAACCAACGGGGTCATCACGTTTTTGAGCAAGATTGGAGGAAGAGAAATTTGAGCTTGTACAGTAATCCGTTGGGTTTTCATGAAATTAAAGATAAGTTTGAAGAGAGTGAAGACAATGGCCTGGATTTGGAGCTGAGGCTTGGTCATCATCCATAG 525 0.4381 MDLNYPEECYSKSSCEETNDDMGIGRSYECIFCKRGFTTAQALGGHMNIHRKERANKTKASFSSHPSSSNNVDGINNYADLGFYSQIPSLSTAPDANSYREVFFPTAAPSVIRPSSHEVLCVENQRGHHVFEQDWRKRNLSLYSNPLGFHEIKDKFEESEDNGLDLELRLGHHP* 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1352 174 Gene3D Classic Zinc Finger 13 78 - -
Gso19g1352 174 PANTHER OS07G0101800 PROTEIN 14 174 - -
Gso19g1352 174 PANTHER TRANSCRIPTIONAL REGULATOR TAC1-LIKE 14 174 - -
Gso19g1352 174 ProSitePatterns Zinc finger C2H2 type domain signature. 30 50 IPR013087 -
Gso19g1352 174 ProSiteProfiles Zinc finger C2H2 type domain profile. 28 55 IPR013087 -
Gso19g1352 174 Pfam C2H2-type zinc finger 28 53 - -
Gso19g1352 174 SUPERFAMILY beta-beta-alpha zinc fingers 26 55 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1352 Gso-Chr19 42255377 42256577 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1352 28 99 C2H2 Transcription Factor Family AT5G43540 47.222 2.10e-17 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1352 - - gmx:102664910 354.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1352 19 42255377 42256577 Gso3g1353 3 39459127 39460364 GST
Gso19g1352 19 42255377 42256577 Gso10g0291 10 3119851 3120993 PCT
Gso10g0291 10 3119851 3120993 Gso19g1352 19 42255377 42256577 PCT