Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1351 ATGGAAGGAAACTTTCTGACCAGAAACACGCATAATAAAGGGGACAGGTTTGGGTTTGAGGAGCATTCATGGCCTGCTAGAAACTATGCTTGTAGCTTTTGCAAGAGAGAGTTCAAGTCTGCTCAAGCCTTGGGTGGCCACATGAATGTTCACAGAAGGGATAGGGCAAGATTGAGATCTTGCTTAACCCCATCATCATGGGTTTCTTCTGAGTTTCCTAATAAACCTAACCCTAGCATTGAGCCTAACCCAACTCATCTTTCATCCTCCTCTCCATCATCATCATGCATATCTAATAACCTGTTGAATTGTGCTCATACGTCTCCACTTTATATCCCTTCTTTGACTTTGTCTTCTTCACTTACTCCAGCTTCTCCCAATGGAGACAAGAAACCAAGAAGAGTATCTCCCCATCTTCTTCCTCTTTTGATTCATCAACGCTGTGAGGAAATTAAGATGAGTAAGAACAAAGCGAGTGGTTTAGGAGTTGAAGAAGTACGGGGTTGTGCAATAGGGGAGGAACTCAAGTTTTTCAAGAGTAGTACTAGTGAGCATAACATCAAGCTGGAGTTGGGAATAGGGTTGATTAAACAACCAGAAAAGTTAGATTTGGAGCTACGATTGGGGCACTGCTAG 636 0.4277 MEGNFLTRNTHNKGDRFGFEEHSWPARNYACSFCKREFKSAQALGGHMNVHRRDRARLRSCLTPSSWVSSEFPNKPNPSIEPNPTHLSSSSPSSSCISNNLLNCAHTSPLYIPSLTLSSSLTPASPNGDKKPRRVSPHLLPLLIHQRCEEIKMSKNKASGLGVEEVRGCAIGEELKFFKSSTSEHNIKLELGIGLIKQPEKLDLELRLGHC* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1351 211 PANTHER OS07G0101800 PROTEIN 15 210 - -
Gso19g1351 211 Pfam C2H2-type zinc finger 29 53 - -
Gso19g1351 211 ProSiteProfiles Zinc finger C2H2 type domain profile. 29 56 IPR013087 -
Gso19g1351 211 PANTHER TRANSCRIPTIONAL REGULATOR SUPERMAN 15 210 - -
Gso19g1351 211 Gene3D Classic Zinc Finger 19 71 - -
Gso19g1351 211 SUPERFAMILY beta-beta-alpha zinc fingers 26 55 IPR036236 -
Gso19g1351 211 ProSitePatterns Zinc finger C2H2 type domain signature. 31 51 IPR013087 -
Gso19g1351 211 MobiDBLite consensus disorder prediction 66 91 - -
Gso19g1351 211 SMART c2h2final6 29 51 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1351 Gso-Chr19 42245537 42246729 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1351 23 209 C2H2 Transcription Factor Family AT3G23130 38.342 2.31e-21 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso19g1351 zf-C2H2_6 6.9e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1351 - - gmx:102660083 403.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1351 19 42245537 42246729 Gso3g1352 3 39444539 39445752 GST
Gso19g1351 19 42245537 42246729 Gso10g0290 10 3110289 3111551 PCT
Gso10g0290 10 3110289 3111551 Gso19g1351 19 42245537 42246729 PCT