Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1345 ATGTCAAATCAGGTGGTGAAAGTGCGAAGGGACACGATTGCAGCATGCATGACTTGCCCACTCTGCGGCAAGCTCTTCAGAGAAGCCACAACCATATCCGAATGTCTCCACACGTTTTGCAGGAAGTGCATTTATGATAAAATTACGGATGAGGAGATAGAATGTTGTCCAATATGCAACATTGATTTGGGTTGTGTTCCACTCGAGAAACTGAGGCCAGACCACAGTTTGCAAGATGTAAGGGCCAAAGTTTTCCCCTTAAAGGGAAGAAAGGTGAAGGCACCTGAAGTTGTCACCTCAGTACCATTACCAGCTAGGAGAAAGGAGAGATCTCTTTCATCTTTGGTGGTCAGCACACCAAGGGTATCTACACAGGCAACCATGACAGGAAGAAGAACAAAGCCTACAAGAAAGGCTAGTGGTTTGCGGTCCACTAGTTTTTCCATTGAAAAGCCCATTAAAAAAGAGGAATATTTACTAGAAGATCGTCCTGATAGTTCAAGCTCACCTGACACTTCACATAAGTTTGCTCATAATTCTGGACAGAGCATGTCCCCTTGCGAGGGTAGTCAGTCCATCCCAAATAAAGGATCAGAGAATGGTGCCGAACCATGGGATGCAAAATTGGATCTTTGGAAACCCTTGAATTGTTTAGTAGAAGTCGCAAGTAGGAGTAAATCTTTCAAGTCTAATATTCTTGGGTCTGATGCTAAATTAGAAACCAATCAAGTAAATGAGAGCGATTCTCAAGTTCTGAAAATAAAAAATAAGGAAAATAAACGTAAGGCAAAAATTGAGGATGAAAAGAGTAGCCCTTATCCTGTCTCTTCAGATACAGCAAAACCAAATAAATTGCGCAGAATACGCAAGAAAAAAGAGCCTGCTTCTGGAGAATCTGGCATATCACCCCAAGCTGTGCTGGATTCTGCCAGCAATAATAGACTCTCAAGGACTGGTCCAATTTGGTTCTCCTTAGTGGCTTCTGAAAACCAGGAAGGAGATGATCCCTTGCCCCAAATTCCTGCAAGTTATTTGAGAATAAAGGATGGTAGTGTACCCGTCTCTTTCATCCAAAAATACCTAATGAAGAAACTGGATTTGACAAGTGAAACAGAGGTTGAGATTAAATGTGTGGGACAACCAGTGCTCCCTACATTGCAGTTATATAATTTGGTTGAGTTGTGGCTGGATACGGCGCCCACGTCACAGAGAATTCCAGCAACTATTGGGTCCTCAGCAAAGGATTTTGTCATGGTCTTGGCTTATGCTCGGAGGGTTCCAGACCCTTGA 1290 0.4302 MSNQVVKVRRDTIAACMTCPLCGKLFREATTISECLHTFCRKCIYDKITDEEIECCPICNIDLGCVPLEKLRPDHSLQDVRAKVFPLKGRKVKAPEVVTSVPLPARRKERSLSSLVVSTPRVSTQATMTGRRTKPTRKASGLRSTSFSIEKPIKKEEYLLEDRPDSSSSPDTSHKFAHNSGQSMSPCEGSQSIPNKGSENGAEPWDAKLDLWKPLNCLVEVASRSKSFKSNILGSDAKLETNQVNESDSQVLKIKNKENKRKAKIEDEKSSPYPVSSDTAKPNKLRRIRKKKEPASGESGISPQAVLDSASNNRLSRTGPIWFSLVASENQEGDDPLPQIPASYLRIKDGSVPVSFIQKYLMKKLDLTSETEVEIKCVGQPVLPTLQLYNLVELWLDTAPTSQRIPATIGSSAKDFVMVLAYARRVPDP* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1345 429 MobiDBLite consensus disorder prediction 158 202 - -
Gso19g1345 429 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 2 425 - -
Gso19g1345 429 ProSitePatterns Zinc finger RING-type signature. 35 44 IPR017907 -
Gso19g1345 429 ProSiteProfiles Zinc finger RING-type profile. 19 60 IPR001841 -
Gso19g1345 429 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 2 425 IPR044807 GO:0004842
Gso19g1345 429 SMART ring_2 19 59 IPR001841 -
Gso19g1345 429 MobiDBLite consensus disorder prediction 112 146 - -
Gso19g1345 429 SUPERFAMILY RING/U-box 14 83 - -
Gso19g1345 429 MobiDBLite consensus disorder prediction 170 198 - -
Gso19g1345 429 MobiDBLite consensus disorder prediction 242 304 - -
Gso19g1345 429 MobiDBLite consensus disorder prediction 251 271 - -
Gso19g1345 429 Pfam Zinc finger, C3HC4 type (RING finger) 19 59 - -
Gso19g1345 429 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 111 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1345 Gso-Chr19 42153291 42159277 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1345 3 348 C3H Transcription Factor Family AT2G30580 54.179 1.38e-113 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1345 K16277 - gmx:100793731 836.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1345 19 42153291 42159277 Gso3g1343 3 39326046 39331508 GST
Gso19g1345 19 42153291 42159277 Gso2g1171 2 14623345 14629194 PCT
Gso19g1345 19 42153291 42159277 Gso10g0277 10 2916537 2922450 PCT
Gso2g1171 2 14623345 14629194 Gso19g1345 19 42153291 42159277 PCT
Gso10g0277 10 2916537 2922450 Gso19g1345 19 42153291 42159277 PCT