Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1339 ATGGAGGTTGGCCTCAAGAAGGAGAACATGGGGTTTGAGGAAACTGAGTTAAGGCTTGGACTGCCTGGAAACGGAGGCACTGAAGAAGTGCTCATCAGGAAGAGGGGTTTCTCTGAGACTGAAACTGGTCATGAAGATGAGTCTGCCACCACTGTGGATTTGATGCTTAATCTTTCTTCTAAGGAGGCCGCAACCACTGCTGCTGCTGCTGCAGATCCAACTGATAAGCACAAGACTTTGCCTAAGGAGAAGACCCTTCTGCCAGCAGATCCTGCTAAGCCTCCAGCCAAGACGCAGGTGGTGGGTTGGCCACCTGTGCGGTCCTTCCGGAAGAACATGTTGGCTGTGCAAAAGAGCGTTGGAGAAGAGAGCGAGAAGAACAGCAGCCCTAATGCAAGCTTTGTCAAAGTTAGCATGGATGGAGCACCTTACCTTCGCAAAGTGGACTTGAAGATGTACAAGAGTTACCGAGAGCTCTCTGATTCTTTAGGCAAAATGTTCAGCTCCTTCACCTTTGGCAATTGTGAATCCCAAGGAATGAAGGATTTCATGAATGAGAGCAAGCTGAATGATCTCTTGAACAGCTCTGATTATGTCCCAACCTATGAGGACAAGGATGGTGACTGGATGCTTGTCGGTGATGTCCCATGGGAGATGTTTGTTGAATCATGCAAGCGTTTACGCATCATGAAAGGAAAGGAGGCTATTGGTCTTGGTCTTGCACCAAGAGCCATGGCAAAATGCAAGAACAGGAGCTAG 759 0.4862 MEVGLKKENMGFEETELRLGLPGNGGTEEVLIRKRGFSETETGHEDESATTVDLMLNLSSKEAATTAAAAADPTDKHKTLPKEKTLLPADPAKPPAKTQVVGWPPVRSFRKNMLAVQKSVGEESEKNSSPNASFVKVSMDGAPYLRKVDLKMYKSYRELSDSLGKMFSSFTFGNCESQGMKDFMNESKLNDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGKEAIGLGLAPRAMAKCKNRS* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1339 252 Pfam AUX/IAA family 14 239 IPR033389 -
Gso19g1339 252 SUPERFAMILY CAD & PB1 domains 123 231 - -
Gso19g1339 252 Gene3D - 126 243 - -
Gso19g1339 252 ProSiteProfiles PB1 domain profile. 132 232 IPR000270 GO:0005515
Gso19g1339 252 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 7 243 IPR003311 GO:0005634|GO:0006355
Gso19g1339 252 PANTHER AUXIN-INDUCED PROTEIN AUX28 7 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1339 Gso-Chr19 42103077 42106974 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1339 125 235 B3 DNA Binding Superfamily AT3G61830 33.333 3.20e-09 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Gso19g1339 AUX_IAA 6.6e-84 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1339 K14484 - gmx:547965 476.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1339 19 42103077 42106974 Gso3g1336 3 39262603 39266124 GST