Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1338 ATGGGGAGCTTTGAAACTGAGCTGAATCTTAAGGCCACAGAGTTGAGGTTGGGATTACCCGGCTGTGATGAAACTCATGACAAAAGTTCATCCAGTAGTGGATCTGTTGTTAGAAGCAACAAGAGATCTTCACCAGAACCCAGTGTGGAAGAGTCCAGGTGCAACTCTAATGGTTCTTCAGATTCTACCACCACAAGTGATCATGATGAAGACAGTGTCCAACCTGCAAAGGTACAAGTAGTGGGGTGGCCACCAATTAGATCTTTTAGGAAGAACAGTCTGCAACAACAGAAGAAGGTGGAGCAGCAGGGTGATGGAAGTGGAACGTATTTGAAAGTGAGCATGGCTGGTGCACCTTACTTGAGGAAGATAGATCTGAAGGTTTACAATAGCTACCCAGAACTCCTCATGGCCTTGCAAAATTTGTTCAAGTGCACATTTGGTGAATATTCAGAGAGGGAAGGTTACAATGGATCTGAATACGCTCCTACTTATGAAGACAAGGATGGTGACTGGATGCTGGTTGGAGATGTTCCATGGAACATGTTTGTATCCTCCTGCAAGAGGCTGAAAATAATCAAAGGATCAGAAGCAAAGGGGTTGGGTTGTTTGTGA 615 0.4472 MGSFETELNLKATELRLGLPGCDETHDKSSSSSGSVVRSNKRSSPEPSVEESRCNSNGSSDSTTTSDHDEDSVQPAKVQVVGWPPIRSFRKNSLQQQKKVEQQGDGSGTYLKVSMAGAPYLRKIDLKVYNSYPELLMALQNLFKCTFGEYSEREGYNGSEYAPTYEDKDGDWMLVGDVPWNMFVSSCKRLKIIKGSEAKGLGCL* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1338 204 SUPERFAMILY CAD & PB1 domains 104 192 - -
Gso19g1338 204 PANTHER AUXIN-INDUCED PROTEIN 7 202 - -
Gso19g1338 204 MobiDBLite consensus disorder prediction 18 77 - -
Gso19g1338 204 Pfam AUX/IAA family 13 202 IPR033389 -
Gso19g1338 204 ProSiteProfiles PB1 domain profile. 108 200 IPR000270 GO:0005515
Gso19g1338 204 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 7 202 IPR003311 GO:0005634|GO:0006355
Gso19g1338 204 MobiDBLite consensus disorder prediction 25 63 - -
Gso19g1338 204 Gene3D - 102 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1338 Gso-Chr19 42088395 42089735 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1338 99 201 B3 DNA Binding Superfamily AT2G46530 34.951 3.79e-12 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Gso19g1338 AUX_IAA 2.3e-59 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1338 K14484 - gmx:100792134 387.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1338 19 42088395 42089735 Gso3g1335 3 39247876 39249299 GST
Gso19g1338 19 42088395 42089735 Gso2g1181 2 14725381 14726978 PCT
Gso19g1338 19 42088395 42089735 Gso10g0271 10 2860778 2862540 PCT
Gso2g1181 2 14725381 14726978 Gso19g1338 19 42088395 42089735 PCT
Gso10g0271 10 2860778 2862540 Gso19g1338 19 42088395 42089735 PCT