Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1335 ATGGAGTCCCACGGCGGAGGACCCCTCCGTTCCCGCAGCTCCCAGTCCCCTTCTCCCTCCCACTCCGCCTCCGCCTCCGCCACCTCCTCCATCCACAAGCGCAAGCTCGCGTCTGAGGACCACGCGCCTCCCTTCCCTCCGTCCTCCTTCTCCGCCGACACCCGCGACGGCGCCCTCACCTCCAACGACGACCTCGAGAGCATCTCCGCCCGCGGCGCCGACTCCGACTCCGACGATGACTCCGAGGACGCCGTCGTCGACGACGACGAGGACGACTACGGCAACGACAACGACTCCTCCATTCGGACCTTCACCGCCTCCAGGCTCAGCAACCCTCCCTCCGCTCCCCGCAACACCAAGCTCAAGACCGAAATCTCCACCGTCAAAATTGAGAATTCTGACGGCGCCAAAGACGCCGTAGTCGGAGCTTGTGCCGCCGCTTCCGCGGGATCGGTCCCCGGGATTGTGGTTAAGGAGGACCCGACTAAGATTTTTACTGATAATTTGCAAACGAGTGGGGCTTACACTGCCAGGGAAGAGAGTCTCAAGAAAGAGGAGGAAGCAGGAAGGCTCAAATTTGTATGCCTATCAAACGATGGTGTTGATGAGCATATGGTTTGGTTGATTGGATTGAAGAATATATTTGCTAGGCAGCTTCCCAATATGCCCAAGGAGTACATTGTCCGACTTGTTATGGATAGGAGCCATAAGTCTGTAATGGTTATAAGGCGTAATCATGTTGTTGGAGGCATTACATATCGCCCATATGCTAGTCAGAAGTTTGGTGAGATAGCCTTTTGTGCAATTACAGCTGATGAGCAAGTAAAGGGTTATGGTACCAGATTGATGAATCACTTAAAACAATATGCACGGGATATGGATGGGCTGACACATTTTCTCACATACGCTGACAATAATGCTGTTGGCTATTTTATCAAGCAGGGATTTACAAAAGAGATTCACTTGGAGAAAGATCGATGGCAAGGTTATATAAAGGATTATGATGGAGGAATTCTCATGGAATGCAAGATTGATCCAAAACTCCCGTACACTGATTTGTCAACTATGATCCGTCGTCAAAGGCAGGCAATTGATGAAAAAATCAGAGAGCTATCAAACTGTCACATCGTTTATGCTGGAATTGATTTTCAGAAGAAAGAAGCTGGTATTCCTAAAAAAATTATTGATGACATCCCTGGTTTGAGAGAGGCTGGATGGACTCCTGATCAGTGGGGTCATTCACGATTCAGAACTTTAAATGTTTCTACTGACAATGCTACTAATCAGAAACATTTGAATGGGTTTATGCGTTCACTTCTAAAGTCAATGTTCGATCATGCTGATGCTTGGCCATTCAAGGAGCCAGTTGATGCTCGGGATGTCCCTGATTATTATGACATCATCAAAGATCCAATGGATTTGAAGACAATGTCTAAGAGGGTGGATTCAGAGCAATATTATGTAACATTTGAGATGTTTGTTGCGGATGCCAGAAGAATGTTTGCGAATGCACGCACCTATAATTCTCCAGAAACCATTTATTACAAATGTTCTACAAGGTTAGAAGCCCACTTTCAAAGCAAAGTGCAAGCGGGCCTCCAGCCTGGTACCAAAATTCAGTAG 1623 0.48 MESHGGGPLRSRSSQSPSPSHSASASATSSIHKRKLASEDHAPPFPPSSFSADTRDGALTSNDDLESISARGADSDSDDDSEDAVVDDDEDDYGNDNDSSIRTFTASRLSNPPSAPRNTKLKTEISTVKIENSDGAKDAVVGACAAASAGSVPGIVVKEDPTKIFTDNLQTSGAYTAREESLKKEEEAGRLKFVCLSNDGVDEHMVWLIGLKNIFARQLPNMPKEYIVRLVMDRSHKSVMVIRRNHVVGGITYRPYASQKFGEIAFCAITADEQVKGYGTRLMNHLKQYARDMDGLTHFLTYADNNAVGYFIKQGFTKEIHLEKDRWQGYIKDYDGGILMECKIDPKLPYTDLSTMIRRQRQAIDEKIRELSNCHIVYAGIDFQKKEAGIPKKIIDDIPGLREAGWTPDQWGHSRFRTLNVSTDNATNQKHLNGFMRSLLKSMFDHADAWPFKEPVDARDVPDYYDIIKDPMDLKTMSKRVDSEQYYVTFEMFVADARRMFANARTYNSPETIYYKCSTRLEAHFQSKVQAGLQPGTKIQ* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1335 540 MobiDBLite consensus disorder prediction 98 120 - -
Gso19g1335 540 ProSitePatterns Bromodomain signature. 449 507 IPR018359 -
Gso19g1335 540 PANTHER GH11602P 3 540 IPR037800 GO:0004402
Gso19g1335 540 MobiDBLite consensus disorder prediction 53 68 - -
Gso19g1335 540 Pfam Acetyltransferase (GNAT) family 238 316 IPR000182 GO:0016407
Gso19g1335 540 PANTHER BNAC04G26160D PROTEIN 3 540 - -
Gso19g1335 540 MobiDBLite consensus disorder prediction 8 32 - -
Gso19g1335 540 Gene3D - 417 535 IPR036427 GO:0005515
Gso19g1335 540 CDD NAT_SF 238 293 - -
Gso19g1335 540 MobiDBLite consensus disorder prediction 76 95 - -
Gso19g1335 540 MobiDBLite consensus disorder prediction 1 120 - -
Gso19g1335 540 PRINTS Bromodomain signature 447 460 IPR001487 GO:0005515
Gso19g1335 540 PRINTS Bromodomain signature 461 477 IPR001487 GO:0005515
Gso19g1335 540 PRINTS Bromodomain signature 496 515 IPR001487 GO:0005515
Gso19g1335 540 SUPERFAMILY Bromodomain 420 530 IPR036427 GO:0005515
Gso19g1335 540 CDD Bromo_gcn5_like 432 531 - -
Gso19g1335 540 ProSiteProfiles Bromodomain profile. 444 515 IPR001487 GO:0005515
Gso19g1335 540 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 191 345 IPR000182 GO:0016407
Gso19g1335 540 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 209 346 IPR016181 -
Gso19g1335 540 Gene3D - 187 351 - -
Gso19g1335 540 Pfam Bromodomain 437 519 IPR001487 GO:0005515
Gso19g1335 540 SMART bromo_6 425 534 IPR001487 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1335 Gso-Chr19 42053690 42061025 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Gso19g1335 Bromodomain 7.5e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1335 K06062 - gmx:100791610 996.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1335 19 42053690 42061025 Gso3g1332 3 39219253 39226334 GST