Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1330 ATGGGTCTGGAAAAGAATCCTCTTGTGTTTTTCGATGTCTCAATTGATGGGGACCCTGTGGAAAGAATTGTTATTCAGCTTTTTGCCAGTATAGTTCCTAGGACAGCAGAGAATTTTCGGGCACTCTGTACAGGTGAGAAGGGCATTGGAGAATTGACGGGGAAACCTTTGCATTATAAAGGAACAAGCTTTCATCGTATAATTAGAGGTTTTATGGCTCAAGGTGGTGATTTTTCAAGGGGTAATGGCACAGGTGGAGAAAGTATATATGGAGGGAAATTTGTAGATGAAAATTTCAAACTAACACATGATGGACCTGGTGTTCTTTCTATGGCTAATAGTGGTCCTAACACAAATGGATCTCAGTTCTTTATTACATTCAAGCGCCAACCTCATCTTGACGGGAAACATGTTGTTTTTGGAAAAGTTGTCAACGGAATGGACATTTTGAAGAAAATTGAACCAGTGGGAACATCTGATGGGAAACCTACCCAACCAGTTAAAATTATTGATTGTGGTGAAGTCTCTGAAACAAAAATTCAGCATACTGCCGACAAGGAGAAAGGGAAAAGGAGAAAATCAGGAAAATCCCTATCTTCTGATGATGGTTCTGACAAAAAATCAAGGGGAAAAAGGAAAAAATCTTCCAAAGACACGAGGAAGAGAAGAAGGAGATACTCTACATCTGATAGCGATAGTGATAGCTACTCCTCAGATTCTGAGTCAGATTCAGATTCTGAATCGGATTCATCAGTTTCTGATTCTAGTTACTCTAGTGATGGGAAACACCAGAAGAGGAGAAGTAAGCGCAAGCATGGGAAGAAGAGGAAAATTGGACGAAAACAGAGAAAGAGAAGCCAGCACAGTAGAAGTAGAAGAGCAAGACGCAAGTCTAGGCGGAGTTCTGAGGATTCAAGTGATACAGATAGTGCTAGTGGCAGCAGTTCTGGCGATGAGAAAACTGATCGTCATGCCTCAGGTCGTAAAACACTTGCTGACAATGAAGCCCGAAGAAATCTAGTTGCTCATGCTACAGACACAGGAAAACAATCTTCTAGCCCTCCTCAGCAAAGGCAAACTATTCCTGAACAAAAAATGGATCCCAAGGTTAGAAGAATTGTGGACAAGCAATCACATGAAGAAGGTGAATTGTCTCCAGAGAATGGTGCATTTGTGAATAACAGGCATGATACTGAAGCTGAATTTAGTAAACCTGCTAAGCAACATGCTAATTCAGATGATTTAAATCACAATAGAGGTGCAAGTCCTCGAAGAAGTCCTACCAGGGATTCTAGGGAGCTAAACCAAGGACATGCTTCATTGTTGGCTAGTCCTGGCCAAAAAGTTTCTGAACCTGCTGCCCCCAAACATGGTCAGGGCTTTTCAAAAAGCCCTTCACCAAATGGCATGCCTAAGCGTATCAAAAAAGGACGTGGCTTTACTGAGCGTTATGCCTTTGCACGCAGATATCGTACTCCTTCTCCAGAGCGGTCTCCTCGTACATATCGTTATGGTGATAGAAATATAAGAAGGAACTTTGATAGAAACACAAGCTACAGAAGTTATTCTGGGCGCTCTCCACCACGACGTTTTCGAAGCCCGCCAGGTGGCAGGAATCGTCCAAGATACCAAAGCAGAAGAAGTCGGAGTAGGAGCAACTCGCGCAGTCCTGTGCGTGGCCATTTCAGCGACCGTGACCGCAGCCGGAGTCCAAGACGTAGTCCTAGTCCAGAAGACAGGCGTCCTCCCATTAGTGACCAATTAAAATCCCGACTTGGTCCAAGAAGTGATGAACGATTGCCAGACAGGGGGAGGTCAAAGTCCAAATCTAGGAGCAATGGCTCTTCTTGCTCCAGATCCCCAGATGCTACACCACCAAAACGTTATGATAAAAGGACTTCCGTGTCTCGCAGCAGGTCTAGATCGAGCTCTCCATCTGGACAAAGGGGTTTAGTTTCTTATGGAGATGCTAGTCCTGATTCTGGGTCAGGGTAA 1995 0.4406 MGLEKNPLVFFDVSIDGDPVERIVIQLFASIVPRTAENFRALCTGEKGIGELTGKPLHYKGTSFHRIIRGFMAQGGDFSRGNGTGGESIYGGKFVDENFKLTHDGPGVLSMANSGPNTNGSQFFITFKRQPHLDGKHVVFGKVVNGMDILKKIEPVGTSDGKPTQPVKIIDCGEVSETKIQHTADKEKGKRRKSGKSLSSDDGSDKKSRGKRKKSSKDTRKRRRRYSTSDSDSDSYSSDSESDSDSESDSSVSDSSYSSDGKHQKRRSKRKHGKKRKIGRKQRKRSQHSRSRRARRKSRRSSEDSSDTDSASGSSSGDEKTDRHASGRKTLADNEARRNLVAHATDTGKQSSSPPQQRQTIPEQKMDPKVRRIVDKQSHEEGELSPENGAFVNNRHDTEAEFSKPAKQHANSDDLNHNRGASPRRSPTRDSRELNQGHASLLASPGQKVSEPAAPKHGQGFSKSPSPNGMPKRIKKGRGFTERYAFARRYRTPSPERSPRTYRYGDRNIRRNFDRNTSYRSYSGRSPPRRFRSPPGGRNRPRYQSRRSRSRSNSRSPVRGHFSDRDRSRSPRRSPSPEDRRPPISDQLKSRLGPRSDERLPDRGRSKSKSRSNGSSCSRSPDATPPKRYDKRTSVSRSRSRSSSPSGQRGLVSYGDASPDSGSG* 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1330 664 MobiDBLite consensus disorder prediction 179 664 - -
Gso19g1330 664 MobiDBLite consensus disorder prediction 179 209 - -
Gso19g1330 664 MobiDBLite consensus disorder prediction 475 514 - -
Gso19g1330 664 MobiDBLite consensus disorder prediction 397 432 - -
Gso19g1330 664 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 10 174 IPR002130 GO:0000413|GO:0003755
Gso19g1330 664 MobiDBLite consensus disorder prediction 263 297 - -
Gso19g1330 664 SUPERFAMILY Cyclophilin-like 5 175 IPR029000 -
Gso19g1330 664 CDD cyclophilin_ABH_like 7 173 - -
Gso19g1330 664 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 4 398 - -
Gso19g1330 664 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP63 4 398 - -
Gso19g1330 664 MobiDBLite consensus disorder prediction 344 363 - -
Gso19g1330 664 MobiDBLite consensus disorder prediction 364 383 - -
Gso19g1330 664 MobiDBLite consensus disorder prediction 558 609 - -
Gso19g1330 664 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 59 76 IPR020892 GO:0003755|GO:0006457
Gso19g1330 664 MobiDBLite consensus disorder prediction 154 173 - -
Gso19g1330 664 Gene3D - 2 182 IPR029000 -
Gso19g1330 664 MobiDBLite consensus disorder prediction 316 342 - -
Gso19g1330 664 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 17 173 IPR002130 GO:0000413|GO:0003755
Gso19g1330 664 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 27 42 IPR002130 GO:0000413|GO:0003755
Gso19g1330 664 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 64 76 IPR002130 GO:0000413|GO:0003755
Gso19g1330 664 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 107 122 IPR002130 GO:0000413|GO:0003755
Gso19g1330 664 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 122 134 IPR002130 GO:0000413|GO:0003755
Gso19g1330 664 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 135 150 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1330 Gso-Chr19 42023073 42028878 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1330 25 171 U-box Gene Family AT5G67530 52.000 1.18e-35 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1330 K09566 - gmx:100791082 966.452
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1330 19 42023073 42028878 Gso3g1328 3 39192460 39198613 GST