Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1327 ATGTCGAATAGCCAAAATCCGAAATATGATGATAGCTCATTTCTCATTGACATAACCACCACTGTGAATTACACCATCAACACTGCCAAAAAGAGATGGCGTTTTGCTTATACAGCTATTTATTCTAGAAGGGTCATGCTTGCCTTGGCCAAAGAAGTCATATCTAAGAGAAATACAAACACTCATCCTTACTCTAAACTCTTCCAATCTCAATCTTCCGGTTCCGGAAGCATTCTTGATATCATTGAGCCACTAATTCCCCAACATGGGACCAATAATCATTATTCCTTGGTTCCTGATGTTGACAAAGCAAGACTTGCTAGCATGGTAAAGGACAAAAACTTGGAAGCCTTTGCTGAGTTTGGAGGAGTTGAAGGTGTTGCAAATATTCTTGGAACCATTCCAGCAAAGGGAATCAGTGGCAGCGACGATGACGTTGCCACACGGCGTGAATTGTTTGGTTCAAACACTTACCAGAGGCCTCCACCCAAGGTATTTCTAAGCTTTGTAGTGGAGGCTTTCAATGACACAACTATTCTGATCCTTCTTGTTTGTGCTGGCCTTTCCCTTGGATTTGGCATAAAAGAACATGGGCCAGGGGAAGGATGGTATGAAGGAGGGAGTATATTTGTAGCAGTATTTCTGGTAGTTGTTGTCACTGCACTCAGCAACTTCAGACAAGAGAGGCAATTTGATAAATTGTCTAAGATAAGCAACAACATCAAAGTTGAAGTTGTGAGAAATGGAAGGCCACAACAGATATCCATCTTTGAGGTACATGTGGGAGATATTGTATCACTTAAAATTGGTGATCAAATTCCAGCTGATGGGTTGTTCTTAAGTGGCTATTCTTTGCTAGTGGATGAATCAAGTATGACAGGTGAGAGCGACCATGTAGAAATTGAGCCTTCAAATAGCCCCTTTTTGCTGTCTGGTGCAAAAGTGGTGGATGGCTTTGCTCAGATGCTTGTGACATCTGTGGGAACCAACACAGCATGGGGTGAAATGATGAGCTCAATTTCGCGAGACACCAAGGAAAGGACACCATTGCAGGCTCGCCTTGACAAGTTAACCTCTTCTATTGGAAAGGTAGGCCTCGCAGTCGCTTTTCTTGTTCTCATAGTCTTGTTAATTCGTTATTTCACTGGAAACACGCAAGATGATAAAGGGAATCAGGAGTTCCAGGGGAGTAAAACCGATGTAAACGATGTTTTCAACGCGGTTGTGCGAATTGTTGCTGCTGCAGTCACCATTGTGGTTGTGGCAATCCCTGAGGGTCTGCCATTGGCTGTTACTCTCACACTTGCTTACTCCATGAAAAGAATGATGGCAGACCAAGCAATGGTGAGGAAACTTTCTGCTTGTGAAACTATGGGGTCAGCAACAGTTATTTGCACAGATAAAACTGGCACCTTAACTTTGAATCAAATGAGAGTCACCAAGTTTTGGCTTGGCCTAGAAAATGCTATGGAAAACTTTTCCAATGCAATGGCTCCTAAAGTTCTTGAGTTATTTCACCAAGGAGTTGGCCTCAACACAACTGGCAGTATATATAAACCTTCATCAGAATCTGAACCTGAAATTTCTGGTAGCCCAACAGAGAAAGCTATACTCTTGTGGGCCGCGTCAGATTTAGGCATGGACATGGACGAACTGAAGCGCACACATGAAGTACTCCATGTTGAAACGTTTAACTCGGAGAAGAAACGAAGTGGCGTGGCAATAAGGAAGAAGACCAACAGCACAGTTCACGTGCATTGGAAAGGTGCTGCAGAGATTATACTTGCAATGTGTTCTAATTACATTGACAATAACGGCATAGAAAAGTCCCTTGATGAAGATCGGAGTAAACTTGAGAAGATAATTCAAGGCATGGCTGCTAGTAGCCTTAGATGTATTGCTTTTGCTTACATGCACATTTCAGAAGATAATGATTATAACGATAAGGAGAAAGTGCATCAAATCCTTAGAAAAGATGGCTTGACCTTGCTAGGTATTGTTGGCCTCAAGGATCCATGCCGATCTGACGTTAAGAAGGCTGTGGAAACTTGTAAACTTGCAGGTGTTAGTATCAAGATGATCACTGGAGATAACATTTTCACTGCAAAGGCCATAGCAGCAGAATGTGGAATATTAGACCTTGATGGCCATGTAAATGCAGGAGAAGTGGTGGAAGGTGTGGAATTCAGGAACTACACGGAGGAAGAGAGAATGGAGAAAGTTGAGAAGATCCGCGTGATGGCAAGATCATCCCCTTTGGACAAACTTTTGATGGTGCAATGCTTGAAAAAGAAAGGCCATGTTGTTGCAGTCACGGGAGATGGCACAAATGATGCACCTGCTCTAAAAGAAGCTGATATTGGACTTTCTATGGGGATTCAAGGAACTGAAGTTGCCAAGGAGAGTTCTGACATTGTGATCTTAGATGACAACTTCAATTCTGTGGCCACTGTCTTAAGGTGGGGGAGATGTGTTTATAACAACATCCAGAAATTCATCCAGTTTCAACTAACCGTAAATGTTGCAGCACTAGTGATCAATTTTGTTGCAGCGGTTTCTTCGGGAGATGTTCCCCTAACAACAGTTCAACTACTATGGGTGAATCTCATTATGGATACTCTAGGAGCATTGGCACTGGCTACAGAAAGGCCTACAAAGGAGTTGATGGAGAAACAGCCAGTGGGTAGAACTGAGCCTCTTATTACTAGAATTATGTGGAGAAACCTTTTAGCTCAAGCTTTATATCAGATTGCTGTTCTCTTGGTTTTACAATTCAATGGAAAGTCAATCTTCAATGTAAATGGGAAGGTAAAGGATACTCTAATTTTTAATACTTTTGTTCTCTGCCAAGTTTTCAACGAGTTCAACTCTAGAAGTATGGAGAAACTTAATGTGTTCCAAGGCACTCACAAAAACCACTTGTTTCTTGGAATTGTGGGGATTACTTTGGTTCTTCAAGTATTGATGGTGGAACTCCTAAGGAAGTTTGCTGATACGGAGAGATTAACATGGGAGCAATGGGGAATTTGTATTGGAATTGCAGCTGTGTCATGGCCAATTGCTTGGTTTACAAAGCTCGTACCTGTTTCAGATATAACGTTCTTTAGCCATCACGTTAAGTGGGTAAAAGTATTGGTCTTCAAGATTAAGCATTTGTTTTCATTTTACCTCGTCACACGTTTGAAGAATCATAAATTCCAAGCATCTTAA 3210 0.4181 MSNSQNPKYDDSSFLIDITTTVNYTINTAKKRWRFAYTAIYSRRVMLALAKEVISKRNTNTHPYSKLFQSQSSGSGSILDIIEPLIPQHGTNNHYSLVPDVDKARLASMVKDKNLEAFAEFGGVEGVANILGTIPAKGISGSDDDVATRRELFGSNTYQRPPPKVFLSFVVEAFNDTTILILLVCAGLSLGFGIKEHGPGEGWYEGGSIFVAVFLVVVVTALSNFRQERQFDKLSKISNNIKVEVVRNGRPQQISIFEVHVGDIVSLKIGDQIPADGLFLSGYSLLVDESSMTGESDHVEIEPSNSPFLLSGAKVVDGFAQMLVTSVGTNTAWGEMMSSISRDTKERTPLQARLDKLTSSIGKVGLAVAFLVLIVLLIRYFTGNTQDDKGNQEFQGSKTDVNDVFNAVVRIVAAAVTIVVVAIPEGLPLAVTLTLAYSMKRMMADQAMVRKLSACETMGSATVICTDKTGTLTLNQMRVTKFWLGLENAMENFSNAMAPKVLELFHQGVGLNTTGSIYKPSSESEPEISGSPTEKAILLWAASDLGMDMDELKRTHEVLHVETFNSEKKRSGVAIRKKTNSTVHVHWKGAAEIILAMCSNYIDNNGIEKSLDEDRSKLEKIIQGMAASSLRCIAFAYMHISEDNDYNDKEKVHQILRKDGLTLLGIVGLKDPCRSDVKKAVETCKLAGVSIKMITGDNIFTAKAIAAECGILDLDGHVNAGEVVEGVEFRNYTEEERMEKVEKIRVMARSSPLDKLLMVQCLKKKGHVVAVTGDGTNDAPALKEADIGLSMGIQGTEVAKESSDIVILDDNFNSVATVLRWGRCVYNNIQKFIQFQLTVNVAALVINFVAAVSSGDVPLTTVQLLWVNLIMDTLGALALATERPTKELMEKQPVGRTEPLITRIMWRNLLAQALYQIAVLLVLQFNGKSIFNVNGKVKDTLIFNTFVLCQVFNEFNSRSMEKLNVFQGTHKNHLFLGIVGITLVLQVLMVELLRKFADTERLTWEQWGICIGIAAVSWPIAWFTKLVPVSDITFFSHHVKWVKVLVFKIKHLFSFYLVTRLKNHKFQAS* 1070
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1327 1069 CDD P-type_ATPase_Ca_PMCA-like 146 905 - -
Gso19g1327 1069 SFLD Haloacid Dehalogenase 447 825 - -
Gso19g1327 1069 SUPERFAMILY Calcium ATPase, transduction domain A 240 339 IPR008250 -
Gso19g1327 1069 Pfam Cation transporter/ATPase, N-terminus 122 189 IPR004014 -
Gso19g1327 1069 Pfam E1-E2 ATPase 241 443 - -
Gso19g1327 1069 Gene3D - 475 672 IPR023299 GO:0000166
Gso19g1327 1069 SUPERFAMILY HAD-like 463 877 IPR036412 -
Gso19g1327 1069 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 114 1029 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Gso19g1327 1069 SUPERFAMILY Calcium ATPase, transmembrane domain M 121 1029 IPR023298 -
Gso19g1327 1069 Gene3D - 172 1025 - -
Gso19g1327 1069 PRINTS H+-transporting ATPase (proton pump) signature 618 636 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gso19g1327 1069 PRINTS H+-transporting ATPase (proton pump) signature 772 788 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gso19g1327 1069 PRINTS H+-transporting ATPase (proton pump) signature 804 829 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gso19g1327 1069 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 742 852 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gso19g1327 1069 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 407 489 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gso19g1327 1069 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 209 382 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gso19g1327 1069 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 472 669 IPR023299 GO:0000166
Gso19g1327 1069 PANTHER CATION TRANSPORTING ATPASE 17 1028 - -
Gso19g1327 1069 PRINTS P-type cation-transporting ATPase superfamily signature 288 302 - -
Gso19g1327 1069 PRINTS P-type cation-transporting ATPase superfamily signature 465 479 - -
Gso19g1327 1069 PRINTS P-type cation-transporting ATPase superfamily signature 665 676 - -
Gso19g1327 1069 PRINTS P-type cation-transporting ATPase superfamily signature 687 697 - -
Gso19g1327 1069 PRINTS P-type cation-transporting ATPase superfamily signature 772 791 - -
Gso19g1327 1069 PRINTS P-type cation-transporting ATPase superfamily signature 796 808 - -
Gso19g1327 1069 PANTHER CALCIUM-TRANSPORTING ATPASE 17 1028 - -
Gso19g1327 1069 Gene3D - 462 817 IPR023214 -
Gso19g1327 1069 Pfam Cation transporting ATPase, C-terminus 857 1026 IPR006068 -
Gso19g1327 1069 ProSitePatterns E1-E2 ATPases phosphorylation site. 467 473 IPR018303 -
Gso19g1327 1069 SMART Cation_ATPase_N_a_2 120 194 IPR004014 -
Gso19g1327 1069 Gene3D - 142 341 - -
Gso19g1327 1069 SFLD p-type atpase 447 825 IPR044492 -
Gso19g1327 1069 Pfam haloacid dehalogenase-like hydrolase 463 786 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1327 Gso-Chr19 41997893 42002094 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1327 29 1037 Primary Pumps ATPases AT3G63380 69.497 0.0 1368
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1327 K01537 - gmx:100790034 2063.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1327 19 41997893 42002094 Gso3g1326 3 39173215 39176875 GST