Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1325 ATGTTCCCCACTGCTATTTCCAATTCAACTTCTTTGTCTGAGGATGCCAGTGTTTCTTCTGGGACAAAAGTTCAGGACTTGGGAGGACTCAATCCCTGGGTCTCAAACATTTCTCCTCAACAACAACAACAGCCTCAAAAGATCAAGAAAAAGAGAAGCCTACCTGGAAATCCAGACCCAGATGCTGAAGTGATAGCCTTATCTCCGAAGACCCTTTTGGCCACTAACAGATTTGTTTGTGAGATCTGTCACAAGGGTTTCCAGAGAGATCAGAACCTGCAGCTTCATAGGAGGGGCCACAACCTCCCTTGGAAGCTGAAGCAAAGGAGCAGCAAAGAGGTGAAAAAGAAAGCCTACGTTTGCCCTGAACCTTCATGCGTTCACCACGACCCCTCAAGAGCCCTGGGGGATCTTACAGGAATCAAGAAACACTTCTGCAGAAAGCATGGAGAGAAGAAGTGGAAATGTGAAAAGTGCTCAAAGATATACGCGGTTCAGTCAGATTGGAAAGCTCACTCAAAAACATGTGGTACTAGAGAATATAGATGTGACTGTGGAATCCTTTTTTCCAGGAAGGATAGTTTCATAACACACAGGGCGTTCTGTGATGCATTGGCGGAAGAAAGTGCTAGACTATCAGCAAATCAATTAGCTGCCGTCGCCACCACCACATCAAATCCATTCCAATCTCTCCATCTTTTCCAAACCCAACAACAGAACTTCCAAAACCACCAAATCAGCAGTTTCAACCAATGGGACTCATCTCAAGAAAACCCTAACCCTACCAATATTATTGCCACTACTTCCCTCCACATCAAGCCAGAGTCTCAAACCTTCCACAACCCCACCCTCTCTTCACTTCTCCAACAGCAACAACCTACCAACAACAAGGGCATGATAGCCTCAACCTTCGGGAACCTCCACGTGGCCACGCAAGCATCTGCCACGTCAGCATACATGTCAGCCACTGCGCTGCTTCAAAAGGCTGCAACCGTTGGAGCCGCTGCCATCACGGGCCCTGTTGGGCCACAACAGCGCGTGACGGGTCACGTGAATCACGTGACCCACCACCTCGGCTCGGGCGAGTTCGGAATCGGAACAGTGAGTCAACTCGACCCAGTGGTGGCGGTGCCAGATAACAACTACATGAGAACAACGTTCAAGGGTGACCGTCTCACAAGGGACTTTCTGGGTCTCACGGCAGATGCTACCGGCGGCGCGGTTGACGTTAGCACCAACGTGAAGGATATGTTAACGTTCGCGGGGGGCGTAGAGTACCACCAACCGCACCGTCAGCATCACCACCACGCGCTTCTGAAGCCCCAACAAGGCTTCGGTTTCCTTGGGACAGCCACTGCCCCCGAGACGTGGGGGAATTGTTAG 1383 0.5047 MFPTAISNSTSLSEDASVSSGTKVQDLGGLNPWVSNISPQQQQQPQKIKKKRSLPGNPDPDAEVIALSPKTLLATNRFVCEICHKGFQRDQNLQLHRRGHNLPWKLKQRSSKEVKKKAYVCPEPSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKIYAVQSDWKAHSKTCGTREYRCDCGILFSRKDSFITHRAFCDALAEESARLSANQLAAVATTTSNPFQSLHLFQTQQQNFQNHQISSFNQWDSSQENPNPTNIIATTSLHIKPESQTFHNPTLSSLLQQQQPTNNKGMIASTFGNLHVATQASATSAYMSATALLQKAATVGAAAITGPVGPQQRVTGHVNHVTHHLGSGEFGIGTVSQLDPVVAVPDNNYMRTTFKGDRLTRDFLGLTADATGGAVDVSTNVKDMLTFAGGVEYHQPHRQHHHHALLKPQQGFGFLGTATAPETWGNC* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1325 460 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 8 440 - -
Gso19g1325 460 MobiDBLite consensus disorder prediction 1 62 - -
Gso19g1325 460 ProSitePatterns Zinc finger C2H2 type domain signature. 80 100 IPR013087 -
Gso19g1325 460 PANTHER PROTEIN INDETERMINATE-DOMAIN 12 8 440 - -
Gso19g1325 460 Gene3D Classic Zinc Finger 112 202 - -
Gso19g1325 460 ProSiteProfiles Zinc finger C2H2 type domain profile. 78 100 IPR013087 -
Gso19g1325 460 SUPERFAMILY beta-beta-alpha zinc fingers 77 174 IPR036236 -
Gso19g1325 460 Gene3D Classic Zinc Finger 74 101 - -
Gso19g1325 460 MobiDBLite consensus disorder prediction 1 50 - -
Gso19g1325 460 Pfam Zinc finger, C2H2 type 78 100 IPR013087 -
Gso19g1325 460 SMART c2h2final6 119 149 IPR013087 -
Gso19g1325 460 SMART c2h2final6 154 174 IPR013087 -
Gso19g1325 460 SMART c2h2final6 78 100 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1325 Gso-Chr19 41960413 41964780 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1325 15 449 IDZ Gene Family AT4G02670 50.559 5.02e-129 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso19g1325 zf-C2H2 0.01 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1325 K25870 - gmx:100788975 899.042
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1325 19 41960413 41964780 Gso3g1325 3 39138617 39143265 GST
Gso19g1325 19 41960413 41964780 Gso10g1396 10 40374577 40378704 PCT
Gso2g1194 2 14903903 14908172 Gso19g1325 19 41960413 41964780 PCT
Gso10g0258 10 2681722 2686333 Gso19g1325 19 41960413 41964780 PCT