LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso19g1324	ATGAACTACCTGTACCCTGTGAAAGAAGAGTACTTAGAATCGCCGCCACCATCATCGTCGTCGCCAACAACAGGAGTTGATGAGTCAGCAATGGTTCCTCCTCCGAGGCCAATGGAGGGGCTTCACGAAATAGGGCCACCCCCATTTCTGACCAAGACTTACGATGCAGTGGAGGACCCCACCACTAGCCACATAGTTTCATGGAACAGAGGAGGTGCCAGCTTTGTGGTTTGGGATCCACACGCTTTCTCCAGAGACCTTCTTCCTAGATACTTCAAGCACAACAATTTCTCAAGCTTCGTCAGGCAACTAAACACTTACGGTTTTAGAAAAATTGATCCAGATAGGTGGGAGTTTGCAAATGAAGGATTCCTTAGAGGGCACAGGCACCAGTTGGCAAGCATAAGGAGAAGGAAACAACCTTCTCGGCCTTATTCTTCTTCTTCTTCTTCTCAACAAGCACAAGGTCACTGTGTTGAAGTTGGTCGCTTTGGACTTGATGAAGAGGTTGATCGTTTGAGGCGTGACAAGCACGTGCTGATGATGGAGCTTGTGAGGCTGAGACAGCAGCAACTGAACACAAGGTCATACCTTCAAGCAATGGAGGAGAGGCTAAGAGGGACAGAAATTAAGCAGCAACAAATGATGGCTTTCTTGGCTAGAGCTTTGAAGAATCCAACTTTTATTCAGCAGCTACTTCAGCAGAAGGAGAAGAGGAAGGAGCTTGAAGAGGCCATGTCCAAGAAGAGGAGAAGGCCAATTGAGGGAGGGCCAAGTGGGGTTGGAGAACCAAGCAGTGGAGGAGAAGAAGGAAGAAGCAGTGTTAAGGTTGAGCCTCTTGTGTTAGGTGAATATGGTTTTGGAGTGTCAGAGTTGGAAGTGTTAGCTATGGAGATGCAAGGTTATGGTAGGGGAAGGAGGGAACAAGAGGAGGAGCCTGAGGCACTAGAATCACAAGAGAGGCTGGAGAAAGAGCTTGATGAAGGGTTCTGGGAAGAACTTTTCAGTGAGGGTTTTGAGGGTGAATTGGATATTCCAACTTCCCAAGACCAAGATGAAGATGTTGCAGCTGTTGCTTGGACAAGAATCTATGGTAGTGATAGCAATCGTTATTTACTCAAGATTATTCAGAAGCCGTAG	1140	0.4719	MNYLYPVKEEYLESPPPSSSSPTTGVDESAMVPPPRPMEGLHEIGPPPFLTKTYDAVEDPTTSHIVSWNRGGASFVVWDPHAFSRDLLPRYFKHNNFSSFVRQLNTYGFRKIDPDRWEFANEGFLRGHRHQLASIRRRKQPSRPYSSSSSSQQAQGHCVEVGRFGLDEEVDRLRRDKHVLMMELVRLRQQQLNTRSYLQAMEERLRGTEIKQQQMMAFLARALKNPTFIQQLLQQKEKRKELEEAMSKKRRRPIEGGPSGVGEPSSGGEEGRSSVKVEPLVLGEYGFGVSELEVLAMEMQGYGRGRREQEEEPEALESQERLEKELDEGFWEELFSEGFEGELDIPTSQDQDEDVAAVAWTRIYGSDSNRYLLKIIQKP*	380

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso19g1324	379	PRINTS	Heat shock factor (HSF) domain signature	49	72	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Gso19g1324	379	PRINTS	Heat shock factor (HSF) domain signature	87	99	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Gso19g1324	379	PRINTS	Heat shock factor (HSF) domain signature	100	112	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Gso19g1324	379	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	20	358	IPR027725	-
	Gso19g1324	379	ProSitePatterns	HSF-type DNA-binding domain signature.	88	112	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Gso19g1324	379	MobiDBLite	consensus disorder prediction	239	256	-	-
	Gso19g1324	379	Coils	Coil	170	190	-	-
	Gso19g1324	379	MobiDBLite	consensus disorder prediction	1	37	-	-
	Gso19g1324	379	MobiDBLite	consensus disorder prediction	303	322	-	-
	Gso19g1324	379	Gene3D	-	42	139	IPR036388	-
	Gso19g1324	379	SUPERFAMILY	"Winged helix" DNA-binding domain	45	138	IPR036390	-
	Gso19g1324	379	Coils	Coil	232	252	-	-
	Gso19g1324	379	MobiDBLite	consensus disorder prediction	131	155	-	-
	Gso19g1324	379	MobiDBLite	consensus disorder prediction	140	155	-	-
	Gso19g1324	379	SMART	hsfneu3	45	138	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Gso19g1324	379	Pfam	HSF-type DNA-binding	49	138	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Gso19g1324	379	MobiDBLite	consensus disorder prediction	239	274	-	-
	Gso19g1324	379	PANTHER	HEAT STRESS TRANSCRIPTION FACTOR A-6B	20	358	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso19g1324	Gso-Chr19	41945445	41948350	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso19g1324	24	342	HSF	AT3G22830	53.295	1.72e-121	355

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Gso19g1324		HSF_DNA-bind	9.1e-32	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso19g1324	K09419		-	gmx:100794264	577.4

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso19g1324	19	41945445	41948350	Gso3g1324	3	39126975	39129716	GST
	Gso19g1324	19	41945445	41948350	Gso10g0257	10	2669927	2672600	PCT
	Gso10g0257	10	2669927	2672600	Gso19g1324	19	41945445	41948350	PCT