Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1320 ATGGAGCAGTATGAAATTCTAGAACAGATTGGCAAAGGTGCATTTGGTTCTGCCCTTCTTGTGAGGCACAAGCACGAAAAGAAAAAGTATGTCCTTAAAAAGATCCGCCTTGCTCGTCAAACTGACAGAACCCGTAGATCTGCCCACCAGGAGATGGAGCTTATATCTAAAGTTCGAAATCCATTTATTGTGGAATATAAAGATTCCTGGGTAGAAAAGGGTTGTTTTGTATGTATCATCATTGGCTATTGTGAAGCAGGGGATATGGCCGAAGCTATAAAAAAGGCTAATGGTGTTAACTTTCCTGAAGAGAAACTTTCTAAGTGGCTTGTTCAATTGCTGATGGCACTTGATTACTTGCATGGAAACCATATTCTTCATCGCGACGTCAAGTGTTCAAATATATTCTTGACAAAAGATCAAGATATACGTCTAGGTGACTTTGGTCTTGCTAAAATGTTGACATCTGATGATCTTGCTTCTTCGGTTGTTGGGACTCCAAGTTATATGTGCCCTGAGCTTCTTGCTGATATACCCTATGGCTCGAAGTCTGATATTTGGTCTTTGGGATGTTGTATCTATGAAATGGCTGCTCACAAGCCAGCTTTCAAAGCTTTTGACATACAGTCATTGATTATCAAAATAAACAAGTGTATAGTAGCTCCCCTACCAACTATGTATTCTGCTGCTTTTCGAGGGCTTGTCAAAAGTATGCTGCGGAAAAATCCAGAGTTGAGGCCAACTGCTGCAGAATTACTAAATCATCCGCATCTTCAGCCTTACATTCATAAAATTCACCTAAAATTAAATAGCCCCATAAGAAGTACTTTTCCATTCCAATGGCCAGAGTCAAATTACATAAGGAGAACTCAGTTTGTAGAGCCAGAGTCTGTTTCTACTCTTTCTGATCTAGATAAATGCTTGTCATTCAACAATGACAGGACCTTGAATCCTAGTATTTCTGGAACTGAACAAATTTCTCAGTGTTCTACTGAAAGAGCTGATGGATTATCCACTTGTTCAGAAGAGAAGATCTATGAACTATCTGTAGGTTGTGTTCGTGGCAAATACAAAACTGACAAATCAAAAGCCACAAAGTTCTCAACCGTTGAGAGAACACCAAGATCTAGAGGAGTTACAGTTTCTGCCACTACCAAAAGGCAAACAATGGCAACATCAAAGACAACCCATTCTGGTCCAAGTGATTCACTTCCAGCATCTCATGCACCATCTGGAAAATTTTCCACACCACCAAGAGCCAGGGCAAGGGCAACACCAAACTTGTACACTAATGTTCTTGGAAGTGTAGACTCTCTTGACGTTTCCATTAATGCACCGCGAATTGACAAGATTGCCGAATTCCCAATGACTTTCTGCGAGGATCCTTTTTCACCTATCCGTGGACCATCATCAACATCTGCACGTTGCTCTTCTAGCTCAGCAGGAAGTACTGCTGATTGCTCCATCACAAAGGACAAGTGTACAATCCAGGAGGACAAAGTTATTCTCCCCACAAGTATCACTAATGCTTGCCCGGGTCCAAAGGGCACTGAATGCTCTCCTGAGCACGTAAAAGCTTGTGTTTCAAGCCATTCCTCTGCTGACTTAGATCAGCACTGGTTTGACACCTCGTCGTACCAGCAACGAGCAGAGGCACTGGAGGGGTTGCTGGAGTTCAGTGCCAGGCTCCTACAACAAGAAAGGTTTGATGAGCTTGGGGTGTTGCTGAAGCCATTCGGGCCTGAGAAGGTTTCTCCAAGGGAAACAGCTATTTGGTTGACTAAGAGCTTTAAACAAACTGCGGTCTAA 1809 0.4251 MEQYEILEQIGKGAFGSALLVRHKHEKKKYVLKKIRLARQTDRTRRSAHQEMELISKVRNPFIVEYKDSWVEKGCFVCIIIGYCEAGDMAEAIKKANGVNFPEEKLSKWLVQLLMALDYLHGNHILHRDVKCSNIFLTKDQDIRLGDFGLAKMLTSDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMAAHKPAFKAFDIQSLIIKINKCIVAPLPTMYSAAFRGLVKSMLRKNPELRPTAAELLNHPHLQPYIHKIHLKLNSPIRSTFPFQWPESNYIRRTQFVEPESVSTLSDLDKCLSFNNDRTLNPSISGTEQISQCSTERADGLSTCSEEKIYELSVGCVRGKYKTDKSKATKFSTVERTPRSRGVTVSATTKRQTMATSKTTHSGPSDSLPASHAPSGKFSTPPRARARATPNLYTNVLGSVDSLDVSINAPRIDKIAEFPMTFCEDPFSPIRGPSSTSARCSSSSAGSTADCSITKDKCTIQEDKVILPTSITNACPGPKGTECSPEHVKACVSSHSSADLDQHWFDTSSYQQRAEALEGLLEFSARLLQQERFDELGVLLKPFGPEKVSPRETAIWLTKSFKQTAV* 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1320 602 MobiDBLite consensus disorder prediction 363 421 - -
Gso19g1320 602 CDD STKc_Nek 3 258 - -
Gso19g1320 602 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso19g1320 602 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso19g1320 602 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Gso19g1320 602 SUPERFAMILY Protein kinase-like (PK-like) 1 312 IPR011009 -
Gso19g1320 602 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Gso19g1320 602 Gene3D Transferase(Phosphotransferase) domain 1 87 299 - -
Gso19g1320 602 MobiDBLite consensus disorder prediction 371 410 - -
Gso19g1320 602 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso19g1320 602 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 591 - -
Gso19g1320 602 PANTHER SERINE/THREONINE-KINASE NEK4 1 591 - -
Gso19g1320 602 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1320 Gso-Chr19 41903666 41911408 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1320 10 259 MAP Kinase Kinase Kinase AT1G53570 31.373 1.73e-37 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Gso19g1320 Pkinase 4.6e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1320 K08857 - gmx:100792678 1190.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1320 19 41903666 41911408 Gso3g1321 3 39076734 39084628 GST
Gso19g1320 19 41903666 41911408 Gso2g1200 2 14957577 14963568 PCT
Gso19g1320 19 41903666 41911408 Gso10g0253 10 2616988 2624094 PCT
Gso2g1200 2 14957577 14963568 Gso19g1320 19 41903666 41911408 PCT
Gso10g0253 10 2616988 2624094 Gso19g1320 19 41903666 41911408 PCT