Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1308 ATGCCATACACAAACACGCCGCGAACAAGAAAAAGAAACAACCTTAGCCGCTTCAACCTGAACTTATGTTTCTCCAATTCCATGCAACCGTTCACACCCAAATCTCCTCCGACAATCCCCACCGCCACTTCCTCGACCGTTGATCACAATCACAACCGTCCATCACCAGCCGCCATGTCATCAACCCCGAACTTTGACAATGATCGCAGTACCGTGACCCCACAAAACCCATTTCCGAGCCTTGGACCCGAACCCGAACCTGCCGACCTAGCCACCGCTTTTGCCTCCCAACGTTTCTTCTTCACCTCCCCCGGCCGCTCCAACTCCATCATCGAATCCGCCAACACCACCGACGCCGACTGTTTTACCACATCCTCATCCTCGCTGTCACCGGTGCCGGCAGACGAATCCGCCACCATCGACAAAATACAGGACCAACTCAAGAGTCTCATTCTTGGTTTGTCCAGTTCTGACGAGAGCGAAGCAAAGGCGTTATTGGACCGCAGCGTTGCGGTAAGAAAGTACTCGCCGGACCCTTACGCGGACTTCCGGCAGTCGATGGAGGAGATGGTGGCGGCGCGTCCCGAGTTGATGGACGTGGCGGCCAAATGGCGCGAGCTGCACGAGCTTCTTCTTTGCTATCTTGCGCTCAACCCGAAGAGCACGCACAAGTTCATTCTCCGTGCTTTTTCTGATTTTCTCCTCAGCCTCATATCGCGTTCTTATTTGCCGCCGCAGGATCCCGGTTCCGGTGACATCGCCGGCGACGGTGGTGGATGCTTGAGTTAG 789 0.5526 MPYTNTPRTRKRNNLSRFNLNLCFSNSMQPFTPKSPPTIPTATSSTVDHNHNRPSPAAMSSTPNFDNDRSTVTPQNPFPSLGPEPEPADLATAFASQRFFFTSPGRSNSIIESANTTDADCFTTSSSSLSPVPADESATIDKIQDQLKSLILGLSSSDESEAKALLDRSVAVRKYSPDPYADFRQSMEEMVAARPELMDVAAKWRELHELLLCYLALNPKSTHKFILRAFSDFLLSLISRSYLPPQDPGSGDIAGDGGGCLS* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1308 262 ProSiteProfiles OVATE domain profile. 172 236 IPR006458 -
Gso19g1308 262 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 19 242 IPR038933 GO:0045892
Gso19g1308 262 TIGRFAM A_thal_3678: uncharacterized plant-specific domain TIGR01568 170 238 IPR006458 -
Gso19g1308 262 MobiDBLite consensus disorder prediction 29 87 - -
Gso19g1308 262 Pfam Transcriptional repressor, ovate 176 237 IPR006458 -
Gso19g1308 262 MobiDBLite consensus disorder prediction 29 77 - -
Gso19g1308 262 PANTHER TRANSCRIPTION REPRESSOR OFP12 19 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1308 Gso-Chr19 41760641 41761832 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Gso19g1308 Ovate 2.2e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1308 - - gmx:102663086 469.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1308 19 41760641 41761832 Gso3g1309 3 38937099 38938544 GST
Gso19g1308 19 41760641 41761832 Gso2g1212 2 15123192 15124018 PCT
Gso19g1308 19 41760641 41761832 Gso10g0239 10 2481152 2482202 PCT
Gso2g1212 2 15123192 15124018 Gso19g1308 19 41760641 41761832 PCT
Gso10g0239 10 2481152 2482202 Gso19g1308 19 41760641 41761832 PCT