Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1301 ATGGAAAACCCTCACTATGCTGTTAGAAAAAGCTTGAAGCGCAAGCTCGAAGCAGATTTAATCCACACTTCCAAACAACTTCACCCAAAGATCTCTGCAAAGATTCTCCGACACGTCTCTCTCCTCAACTCCGCTCACCCATCCTCTGTCTCTGATTGTACTGCCATTAAGAGTGCTATTGATGCCCTATCTCTACTCGCTGAAAACGAGGATCTTGTGGATACTCTACTGAAATGCGGTGTCGTCCCCGCTCTGGTGAGGCATCTTCGATTGACAGACAACGCACGGAGAGATGACGGTGATGAGGCAGACTCTGTGAAAGATGACAGTGATGGCGTTACCAAACATTTTCAGTTTGAGGTCATCAAAGGATGCGCGGTCATCCTTGAGCTTCTTGCCATTGAAAAAGAGTATCAGCAACTCGTTGTGGATGCTGGAGCCTTGCCCTGTCTTGTTGATTGGTTAAGGATGCAAAAGATCAGTACTATTGCTCAACCACTTATTGACCTTCTAAAGAGAGTAGCTGATGCAATAACCAGCCTAGCCCATGAAAATACTGGCATTAAGACCCTAGTCAGGATGGAAGGTGGTATAGCTCCTCTTGTTGAATTGCTTGAATTCAATGACATAAAGGTACAGAGAGCAGCTGCACGGGCCTTGCGAACTCTTGCATTTAACAATGATGCTAATAAAAATCAGATTGTTGAATGCAATGCGTTACCCACTCTTGTACTAATGCTCCAATCAGAGGATCCTAAAGTACATTATGAGGCAGTTGGTGTGATTGGAAATCTGGTCCACTCTTCGCCAAATATTAAGAAAGAAGTTCTTCTAGCTGGTGCTTTACAACCTGTCATTTCTTCACTTAGTTCCTCCTGTCCGGAGAGCCAAAGAGAAGCAGCTCTTTTAATTGGTCAGTTTGCCACAACAGATTCAGATTGCAAGGTTCATATTGGCCAAAGAGGGGCTATTCCACCATTAGTTGATATGCTTAAGTCTCCAGATGTTGAGCTTCAGGAAATGTCAGCTTTTGCACTTGGGAGGTTGGCACAGGACTCACATAATCAAGCTGGTATTGCTCAAAGTGGAGGTATAGAGCCTCTGCTCAAACTTCTTGGCTCAAAGAAGGTTCCTGTCCAACAAAATGCTGTTTTTGCTCTCTATAGTCTTGTTGATAATGAGAACAATGTTGCAGACATTATTAAGAAGGATGGTTTTCAAAAACTGAAGGCTGGAAATTTCAGAAATCAACAAACTGGAGTGTGTGTAACAAAGACATTAAAAAGATTAGAGGAAAAGACTCAAGGGCGAGTGTTGAAACACCTAATACATCTTATACGCTTGGCGGAAGAAGCAGTTCAAAGACGTGTAGCTATTGCTCTTGCTTATTTATGTTCTCCTCATGATCGTAAAACTATATTCATTGACAATAATGGATTAAAATTGCTGCTGGATATTCTTAAATCTTCAAATGTAAAGCAGAAGAGTGATGCTTCAATGGCGCTTCACCAATTGGCTGCCAAAGCCAGTTCTTCTTTCTCTCTTTTTGACATCGCTCCTCCATCACCAACTCCCCAGATGTACTTGGGCGAGGAATATGTAAACAATCCTAAACTTTCTGATGTCACATTCCTGGTTGAAGGTAGAAGTTTCTATGCTCATAGAGATTGTTTAGTTTCTTCGGATATCTTTCGTGCAATGTTTGATGGCAGTTATAGGGAAAGGGAAGCCAAAAATATAGTGATTCCGAACATTAAATGGGATGTCTTTGAATTGATGATGAGATTTATATACACTGGAACAGTAGATGTCAATTTGGATATTGCTCAGGACCTGCTCAGAGCAGCAGATCAGTATCTTCTGGACGGCCTTAAGCGTATATGCGAATATGCTATTGCTCAGGAAATTTCTGAGGAAAATGTTTCACTACTGTACAAGATGTCAGAGGATTTCAATGCTACTTCATTAAAACATTCATGTATACTGTTTATGCTGGAGAAATTTGATAAACTGAGATCTGAACCATGGTATTGTCCTCTGGTTCGTCACATTTTACCAGACATATGCATGTTCTTCTCAACTTTACTTGTCAAGTCTCATCCAGCTGACTCATGA 2115 0.4142 MENPHYAVRKSLKRKLEADLIHTSKQLHPKISAKILRHVSLLNSAHPSSVSDCTAIKSAIDALSLLAENEDLVDTLLKCGVVPALVRHLRLTDNARRDDGDEADSVKDDSDGVTKHFQFEVIKGCAVILELLAIEKEYQQLVVDAGALPCLVDWLRMQKISTIAQPLIDLLKRVADAITSLAHENTGIKTLVRMEGGIAPLVELLEFNDIKVQRAAARALRTLAFNNDANKNQIVECNALPTLVLMLQSEDPKVHYEAVGVIGNLVHSSPNIKKEVLLAGALQPVISSLSSSCPESQREAALLIGQFATTDSDCKVHIGQRGAIPPLVDMLKSPDVELQEMSAFALGRLAQDSHNQAGIAQSGGIEPLLKLLGSKKVPVQQNAVFALYSLVDNENNVADIIKKDGFQKLKAGNFRNQQTGVCVTKTLKRLEEKTQGRVLKHLIHLIRLAEEAVQRRVAIALAYLCSPHDRKTIFIDNNGLKLLLDILKSSNVKQKSDASMALHQLAAKASSSFSLFDIAPPSPTPQMYLGEEYVNNPKLSDVTFLVEGRSFYAHRDCLVSSDIFRAMFDGSYREREAKNIVIPNIKWDVFELMMRFIYTGTVDVNLDIAQDLLRAADQYLLDGLKRICEYAIAQEISEENVSLLYKMSEDFNATSLKHSCILFMLEKFDKLRSEPWYCPLVRHILPDICMFFSTLLVKSHPADS* 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1301 704 Gene3D - 20 161 IPR011989 -
Gso19g1301 704 Gene3D - 295 514 IPR011989 -
Gso19g1301 704 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 196 231 IPR000225 GO:0005515
Gso19g1301 704 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 363 405 IPR000225 GO:0005515
Gso19g1301 704 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 322 364 IPR000225 GO:0005515
Gso19g1301 704 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 1 704 IPR044282 -
Gso19g1301 704 SMART BTB_4 540 636 IPR000210 GO:0005515
Gso19g1301 704 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 238 280 IPR000225 GO:0005515
Gso19g1301 704 Gene3D - 162 294 IPR011989 -
Gso19g1301 704 Pfam BTB/POZ domain 532 634 IPR000210 GO:0005515
Gso19g1301 704 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 PROTEIN 1 704 - -
Gso19g1301 704 Pfam Armadillo/beta-catenin-like repeat 189 224 IPR000225 GO:0005515
Gso19g1301 704 Pfam Armadillo/beta-catenin-like repeat 227 266 IPR000225 GO:0005515
Gso19g1301 704 Pfam Armadillo/beta-catenin-like repeat 311 350 IPR000225 GO:0005515
Gso19g1301 704 Pfam Armadillo/beta-catenin-like repeat 358 388 IPR000225 GO:0005515
Gso19g1301 704 Gene3D Potassium Channel Kv1.1; Chain A 520 665 IPR011333 -
Gso19g1301 704 SUPERFAMILY ARM repeat 437 509 IPR016024 -
Gso19g1301 704 SMART arm_5 269 309 IPR000225 GO:0005515
Gso19g1301 704 SMART arm_5 311 351 IPR000225 GO:0005515
Gso19g1301 704 SMART arm_5 352 392 IPR000225 GO:0005515
Gso19g1301 704 SMART arm_5 69 134 IPR000225 GO:0005515
Gso19g1301 704 SMART arm_5 227 267 IPR000225 GO:0005515
Gso19g1301 704 SMART arm_5 135 183 IPR000225 GO:0005515
Gso19g1301 704 SMART arm_5 467 507 IPR000225 GO:0005515
Gso19g1301 704 SMART arm_5 185 225 IPR000225 GO:0005515
Gso19g1301 704 SMART arm_5 425 466 IPR000225 GO:0005515
Gso19g1301 704 ProSiteProfiles BTB domain profile. 540 606 IPR000210 GO:0005515
Gso19g1301 704 SUPERFAMILY POZ domain 531 633 IPR011333 -
Gso19g1301 704 SUPERFAMILY ARM repeat 53 405 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1301 Gso-Chr19 41617469 41623398 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1301 282 508 U-box Gene Family AT1G23030 23.849 3.96e-10 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Gso19g1301 BTB 1.3e-22 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1301 - - gmx:100783124 1367.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1301 19 41617469 41623398 Gso3g1298 3 38756712 38763969 GST