Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1291 ATGGCTACGCCGCCAAATAGCAGGCTTCACACCATGTTGCGGGCATCAGTGCAATCAGTTCAGTGGACTTACAGCCTCTTCTGGCAACTTTGTCCACAACAAGGGATATTGACTTGGGGTGATGGATACTACAACGGAGCAATTAAGACACGGAAGACAGTGCAAGCAATGGAGGTAAGCACTGAGGAAGCGTCTCTGCAAAGAAGCGAGCAACTAAGGGAGTTATATGAATCTTTGTCTGCTGAGGAGACAATAAACACGCAAACACGAAGGCCATGTGCTGCTTTGTCGCCTGAGGATCTAACTGAATCCGAATGGTTCTATTTGTTGTGTGTCTCTTTCTCCTTTCATCTTGGTATCGGGTTGCCCGGAACAGCATATGCCAGGAGGCAGCATTTATGGCTCAGTGGTGCAAACGAAGTAGACAGCAAAACTTTTTCAAGAGCTATTCTTGCCAAGAGTGCTCATATACAGACAGTGGTGTGTATTCCTGTGTTGGAGGGCGTCGTTGAGTTGGGCACAACCGATAAGATCGAAGAAGACCTAAATTTCATCCAACACATAAAGAGCTTCTTCATAGATCAGCAGCCTCCTCCTCCCACGGCAAAGCCTGCACTGTCAGAGCACTCCACCTCCAATCTCACTTCTTCATACCCTCTTGTTATTGTTCCTGTCACTGCTGCCGCCACCGCCAATAATGTTCTCATCCAAAACGACATGAACATTGTTGATAAAGGAGAAGCTATTATATTGAATAATAATAATAATAATACCGAAGCAGAATTATTAGCAGACCCTAACAGTAACAGTTTCATACCGAGCGAGCTAATGGAGCTGGACCACCAGTTGGAGGAATTCGGGGTCGGATCACCTGGAGATGGCTCCAATCACTTGGATTCCTTCCCCAAAGAGGAGTCAATGGCACTGTGTGCTGCAGGGTTGGAGCTCCTTCAACTTCAACGACCACCAGCTCCAGCACATCCTCCCACAGAAAATCTAGCACAAGGCGACACAGACACCCACTACTCTCAAACAGTGTCCAGCATCCTTAAAAAGAACTCCAGCAGGTGGTGGCCGGATTCACCCTCCGTCAACCACCCCACTGACTCCTTCCAATCAGCTTTCAACAAATGGAAATCCGACACTGACAACCACCACCACTATTTCCACGAGACGGTGGCCGATGGCACCTCGCAGGGGCTCCTCAAGTACATTTTGTTCAACGTCCCTTACTTGCACGCCAACCGGCTCAAGGGCACGGGAGCTTCGTCATACGAGACTAATCACGTGATGGCGGAGCGCCGCAGAAGGGAGAAGTTGAATGAGAGGTTTCTCATTCTACGTTCGATGGTACCTTTCATGATGAGGATGGACAAGGAGTCCATTCTGGAAGATACCATCCACTACATCAAACAGTTAAGAGAGAAGATTGAGAGTCTCGAAGCGCGTGAGCGCCTCCGGGGGAAGAGGAGAGTGAGGGAGGTGGAGGTTTCGATCATAGAGAGCGAGGCGCTGTTGGAGGTGGAGTGTGTGCATAGGGAAAGGTTGTTGCTGGATGTGATGACAATGTTGAGGGAGTTAGGGGTGGAAGTGATGATGGTGCAGTCTTGGGTTAAGGATGATGGAGTGTTTGTGGCGGAGATGAGGGCCAAGGTGAAGGAAAATGGTAACGGGAAAAAGGCTAGTGTTGTTGAAGTGAAAAATGCCCTTAACCAGATTATACCACATCATGAGCCATACACACTTTGTTCCAATGATCACTTTTAA 1767 0.4844 MATPPNSRLHTMLRASVQSVQWTYSLFWQLCPQQGILTWGDGYYNGAIKTRKTVQAMEVSTEEASLQRSEQLRELYESLSAEETINTQTRRPCAALSPEDLTESEWFYLLCVSFSFHLGIGLPGTAYARRQHLWLSGANEVDSKTFSRAILAKSAHIQTVVCIPVLEGVVELGTTDKIEEDLNFIQHIKSFFIDQQPPPPTAKPALSEHSTSNLTSSYPLVIVPVTAAATANNVLIQNDMNIVDKGEAIILNNNNNNTEAELLADPNSNSFIPSELMELDHQLEEFGVGSPGDGSNHLDSFPKEESMALCAAGLELLQLQRPPAPAHPPTENLAQGDTDTHYSQTVSSILKKNSSRWWPDSPSVNHPTDSFQSAFNKWKSDTDNHHHYFHETVADGTSQGLLKYILFNVPYLHANRLKGTGASSYETNHVMAERRRREKLNERFLILRSMVPFMMRMDKESILEDTIHYIKQLREKIESLEARERLRGKRRVREVEVSIIESEALLEVECVHRERLLLDVMTMLRELGVEVMMVQSWVKDDGVFVAEMRAKVKENGNGKKASVVEVKNALNQIIPHHEPYTLCSNDHF* 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1291 588 SMART finulus 430 479 IPR011598 GO:0046983
Gso19g1291 588 Coils Coil 463 483 - -
Gso19g1291 588 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 423 485 IPR036638 GO:0046983
Gso19g1291 588 PANTHER TRANSCRIPTION FACTOR TT8 8 576 - -
Gso19g1291 588 Pfam Helix-loop-helix DNA-binding domain 427 474 IPR011598 GO:0046983
Gso19g1291 588 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 9 192 IPR025610 -
Gso19g1291 588 Gene3D - 422 486 IPR036638 GO:0046983
Gso19g1291 588 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 424 473 IPR011598 GO:0046983
Gso19g1291 588 PANTHER TRANSCRIPTION FACTOR TT8 8 576 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1291 Gso-Chr19 41480380 41488788 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1291 342 576 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09820 43.621 7.52e-50 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso19g1291 bHLH-MYC_N 1.1e-52 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1291 - - gmx:100780422 1133.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1291 19 41480380 41488788 Gso3g1290 3 38643700 38651715 GST
Gso19g1291 19 41480380 41488788 Gso10g0225 10 2340333 2350162 PCT
Gso10g0225 10 2340333 2350162 Gso19g1291 19 41480380 41488788 PCT