Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1283 ATGAGCTATCACATGCATAATAATGAAGAAACACACAGAGGTTTGAAAAGAAAGCCCCCACATATGGATCGAGGGCAAGAACGGAGACCATACAATACGAATTCTAGACCTTATGATATGAACGCGGTTCCTGATGGTTGGTTAGACTGCCCACCACATGGGCAAGAAATAGGATGTATAATCCCTTCAAAGGTTCCACTTGGTGATTCCTTCAATGATTACATTTCAAGTCAAAAATATACTCCCAAGCAAGCAATTCATCAACAAAGAGTCTTAGGTAGAGAACTTGGTTTAGTGATTGATCTGACAAATACTACTCGCTACTATCGTGTATCAGATTGGACAAAAGAAGGGATTGGTCATGTCAAGATAAGATGCACAGGAAGAGATGCTGTACCTGATGATGAATCCGTAAAAAAATTTTGTGATAAGGTTCTGGATTTTTGCTCCCAAAGAACAAACACAAAGAAATATATACTTGTACATTGCACACATGGGCATAATCGTACAGGTTATATGATTGTTCACTTTCTTGTGCGCACGGAATCTATTTCTGTTACTGAGGCGATAAATAAATTTGCTTGCGCACGCCACCCAGGAATTTACAAGCAGGACTACATTGATGCCCTGTACATGTTTTATCATGAAAAGAAGCCTGAAGATCTTGTTTGTCCTCAAACTCCTGAATGGAAGAGAATTTCTGATCCCGATTTTCGTGGCACAGCTGTTCCAGCTGTGGACAATTGTGCACACATTCCTGAACAGGGGACTATTGTGAGGAATGAAGTATTAACAAGTGATGATGCTTTGGGAGATCCAATTCCTCCAAACCAGCTGCGTTCAATGCAAGAACTTTGTTATCAACTGCTCAAGTTGGGCACAGGGGGAAGAGGATGCTGGCAGTTTCCTGGATCACACCCTGTTTCTCTGAACAGGGACAATCTGCAACTCTTAAGACAACGATATTACTATGCCACGTGGAAAGCTGATGGGACACGATATATGATGCTGATTACTTGCGATGGATGTTATCTGATTGACAGAAAATTTCTTTTCCAAAGGATCAATATGCGATTTCCTTGCAGATATACTAATGGGGGTACACCTGAGAGGAATCACCACTACACATTACTTGATGGGGAGATGATTATTGACACAGATCCACATACACATAAGCAAGAGAGAAGATACCTCATTTATGATTTGATAGCTATTAATCAAGTCTCTTTGACAGAGCTGCCATTCTATGAAAGGTGGAAATTGCTGGAGAAAGAAGTAATTGAACCTCGTAATATGGAACGTGAGGGCCTCTCAAAGAGTATAAATCCTTATTATAGATATGACTTGGAACCATTTAGTGTGAGGAGGAAGGGTTTTTGGTTACTATCTACCGTGTCAAAGCTCCTTCATAAATTCATTCCACAACTATCGCATTCATCAGATGGTCTTGTATTCCAGGGTTGGGATGATCCATATGTCCCTCGCACACATGAAGGTCTTCTGAAGTGGAAATACCCTGAGATGAACTCTGTTGATTTCCTCTGTGAGGTGGGAGCTGGTGATCGTCCCTTGCTTTTTCTATTTGAACGAGGAAGGAAGAAGTTAATGGAAGAGAATGTTATTTTTAAAGATGCATCGGACATTTCTTCCTATTCAGGGAAGATCATTGAATGCTACTGGGATTCTGCGGAGCATCATTGGGTCTGCATGCGGATCAGAATAGACAAAGCCACTCCAAATGATATCAATACCTATAGAAAGGTAATGCGAAGCATAAAGGATAACATCACAGAAGATGTATTATTGAATGAGATCAATCAGATCATTCGCCTACCCTTGTATGCAGACAGAATACAGAGGGATATCAAGGCTCACCAGCATATGATCTCTTTGCGGCGCAAGTGA 1905 0.4089 MSYHMHNNEETHRGLKRKPPHMDRGQERRPYNTNSRPYDMNAVPDGWLDCPPHGQEIGCIIPSKVPLGDSFNDYISSQKYTPKQAIHQQRVLGRELGLVIDLTNTTRYYRVSDWTKEGIGHVKIRCTGRDAVPDDESVKKFCDKVLDFCSQRTNTKKYILVHCTHGHNRTGYMIVHFLVRTESISVTEAINKFACARHPGIYKQDYIDALYMFYHEKKPEDLVCPQTPEWKRISDPDFRGTAVPAVDNCAHIPEQGTIVRNEVLTSDDALGDPIPPNQLRSMQELCYQLLKLGTGGRGCWQFPGSHPVSLNRDNLQLLRQRYYYATWKADGTRYMMLITCDGCYLIDRKFLFQRINMRFPCRYTNGGTPERNHHYTLLDGEMIIDTDPHTHKQERRYLIYDLIAINQVSLTELPFYERWKLLEKEVIEPRNMEREGLSKSINPYYRYDLEPFSVRRKGFWLLSTVSKLLHKFIPQLSHSSDGLVFQGWDDPYVPRTHEGLLKWKYPEMNSVDFLCEVGAGDRPLLFLFERGRKKLMEENVIFKDASDISSYSGKIIECYWDSAEHHWVCMRIRIDKATPNDINTYRKVMRSIKDNITEDVLLNEINQIIRLPLYADRIQRDIKAHQHMISLRRK* 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1283 634 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 286 505 - -
Gso19g1283 634 Gene3D DNA ligase/mRNA capping enzyme 265 504 - -
Gso19g1283 634 MobiDBLite consensus disorder prediction 1 38 - -
Gso19g1283 634 PANTHER MRNA-CAPPING ENZYME 6 634 - -
Gso19g1283 634 CDD Adenylation_mRNA_capping 277 505 IPR001339 GO:0004484|GO:0005524|GO:0006370
Gso19g1283 634 SMART dsp_5 76 216 IPR020422 GO:0006470|GO:0008138
Gso19g1283 634 Gene3D - 536 611 IPR012340 -
Gso19g1283 634 Pfam mRNA capping enzyme, C-terminal domain 540 602 IPR013846 -
Gso19g1283 634 Gene3D Protein tyrosine phosphatase superfamily 18 237 IPR029021 -
Gso19g1283 634 MobiDBLite consensus disorder prediction 1 30 - -
Gso19g1283 634 Pfam Dual specificity phosphatase, catalytic domain 94 214 IPR000340 GO:0008138|GO:0016311
Gso19g1283 634 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 43 231 IPR029021 -
Gso19g1283 634 ProSitePatterns Tyrosine specific protein phosphatases active site. 161 171 IPR016130 GO:0016311|GO:0016791
Gso19g1283 634 PIRSF mRNA_capping_HCE 30 634 IPR017074 GO:0004484|GO:0006370|GO:0140818
Gso19g1283 634 PANTHER MRNA-CAPPING ENZYME-LIKE 6 634 - -
Gso19g1283 634 SUPERFAMILY Nucleic acid-binding proteins 507 619 IPR012340 -
Gso19g1283 634 Pfam mRNA capping enzyme, catalytic domain 306 504 IPR001339 GO:0004484|GO:0005524|GO:0006370
Gso19g1283 634 Coils Coil 625 634 - -
Gso19g1283 634 CDD RNA_5'-triphosphatase 46 212 - -
Gso19g1283 634 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 139 208 IPR000387 GO:0016311|GO:0016791
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1283 Gso-Chr19 41399859 41414957 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1283 18 624 Protein tyrosine phosphatase (PTP) family AT3G09100 61.812 0.0 785
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1283 K13917 - gmx:100778292 1326.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1283 19 41399859 41414957 Gso3g1283 3 38568771 38577560 GST