Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1282 ATGACTATGACCATGTCAAGAGTGATGTGTAGACCAACGCAGCCACTGAAAAACGTTCCTACTAATACATCCAGTGGCCAAAACCAGATAATAAGGCCAAAAGAGAAGGTGGTGTTGGTGATGGGAGCAACCGGAAGCGGCAAAACGAGGTTGTCGATCGACCTAGCCACATGTTTCCCATCAGAAATCATAAACTCCGACAAAATGCAAGTCTATTCGGGCCTCGACGTTGTCACAAACAAAGCAACAAAAGAAGAACAACGTGGGATCCCTCACCACCTGCTAGGGACACAGAACCCCAACAAGGAGTTCACTGCCTCTGACTTCTGCGACATGGCGTCACACGCCATTGAATCCATCACAAACCGCGAGAAGGTTCCAATAATTGTTGGAGGCTCTAACTCATACATGGAGGCCCTTGTGGACAAGTTCGGGACACGTTACGAATGGTGTTGTCTCTGGGTGGATGTTTCCACGCCCGTGCTTCATTCCTACGTTGCGCAGCGCGTGGATCAAATGATTGGTGGCGGAATGGTGAACGAGCTGAGACCCTTTTTCAGTCCCAACGGGGATTACTCGAAGGGGATAAGAAAGGCCATTGGGGTGCCGGAGTTCCACGAGTATTTTCGGAGAGAAGCGTTTTCAAGCACCGAAATGAGGATGAGGTTGCTGCAGGACGCGGTGAGGGAGGTGAAGAGGAACACGTGCCACTTGGCATGCAAGCAGCTTGGGAGGATTCAGTGGCTGAGGAGTGTTAAGGGATGGAAGATTCACCGTGTTTGTGCCACTCCCGTGTTCCAGAAACGTGGCCAGGAAGCGAATGATGCGTGGAAGAACGTTGTGGCACAGCCGTGTGCCTCCATAGTTTCCCAGTTTCTCTATAGTGCCAATGCTGTTTCTGGGAGAGTGCCAGCTTCTTTGCAGCAAAATAGTCATTAA 939 0.5059 MTMTMSRVMCRPTQPLKNVPTNTSSGQNQIIRPKEKVVLVMGATGSGKTRLSIDLATCFPSEIINSDKMQVYSGLDVVTNKATKEEQRGIPHHLLGTQNPNKEFTASDFCDMASHAIESITNREKVPIIVGGSNSYMEALVDKFGTRYEWCCLWVDVSTPVLHSYVAQRVDQMIGGGMVNELRPFFSPNGDYSKGIRKAIGVPEFHEYFRREAFSSTEMRMRLLQDAVREVKRNTCHLACKQLGRIQWLRSVKGWKIHRVCATPVFQKRGQEANDAWKNVVAQPCASIVSQFLYSANAVSGRVPASLQQNSH* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1282 312 Pfam IPP transferase 147 250 - -
Gso19g1282 312 Pfam IPP transferase 70 144 - -
Gso19g1282 312 PANTHER ADENYLATE ISOPENTENYLTRANSFERASE 5, CHLOROPLASTIC 25 298 - -
Gso19g1282 312 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 37 166 IPR027417 -
Gso19g1282 312 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 159 257 - -
Gso19g1282 312 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 25 298 IPR039657 -
Gso19g1282 312 MobiDBLite consensus disorder prediction 1 27 - -
Gso19g1282 312 Gene3D - 34 293 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1282 Gso-Chr19 41394186 41395517 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1282 145 306 C2H2 Transcription Factor Family AT2G27760 29.630 5.00e-22 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1282 K10760 - gmx:100777757 637.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1282 19 41394186 41395517 Gso3g1281 3 38554699 38555941 GST
Gso19g1282 19 41394186 41395517 Gso2g1233 2 15328894 15330330 PCT
Gso19g1282 19 41394186 41395517 Gso10g0219 10 2276337 2277717 PCT
Gso2g1233 2 15328894 15330330 Gso19g1282 19 41394186 41395517 PCT
Gso10g0219 10 2276337 2277717 Gso19g1282 19 41394186 41395517 PCT