Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1265 ATGCCACTCTTTGTGTTCCTAGCCACCATCTTCCTCACTCTCCCAACCCTCTCCCTCTCTGTCACATCATGTCTCCTCAACACCACCCTCCTCCGTTCAAGACCCTCCTCCTCCGTCGACTCCGCCACGCGCTGTCGTTACATTCTCCAAACCATTCGTGTTCTCCAATCCGATTACCTCCACCGCACCGGTTTCTTCTTCCCTCCTTCTAGTTCTTCCTTCTCGTGCTGGAACACTCTCCAATCTTCCATCAACCAATACGACATTCGCTCCTCCTGCAACCTCCCTTCCTCTTCCATTTCCCTCTCCTGCAACAACATCACCACCAAATCCCAGTTCGAAAATTCTCTTCCAAACTCGGCTCTTAAACCCGTGTGGAGCACTTGTAACCAATCTCTTAAGAGTTCCTTAGCTTGTTCTCAATGCAATAAAACTTTGTCCAAGTTGGATTCTTTTCTCACGGAACCGTCCACTGGGGAACTCGTTGATTGCAAGGCCATTGCTTCTATCTATGCTGCTTCCTTCTCCGATCCGCAGGACTCCGGCACCGCCAACTGTTTGTTCAACTTCGGTTTTTCCTCTTCGGTTTCCAGTGGTAAGCGTCGAAACATTCCTGTTGTGGTTTTTTCTGTGTTGGCCTTTTTTTTGTTGGTCTTTGGTGCTTTATGGGCTTACTTTAGATTCAAGCAAAAGCAGAAGAAAAAAGATATTGGTAAAATTGAGATGGGTTTGGGTTCTGGGTTGGATTCTGGGTTTGATTCTTTGAACCAAAGTACCACTTTGATTAGGTTCACTTTTGATGAGATTAAAAAGGCTAGTAGGAATTTCGCCGGTGACAACATAATTGGGAAGGGGGGTTATGGGAATGTTTATAAAGGGGTGCTTTTTGATGGGACTCGAGTTGCATTGAAGAGATTCAAGAATTGTTCTGTTGCTGGGGATGCTAGCTTCACTCATGAGGTTGAGGTAATTGCAAGTGTTAGGCATGTGAACCTTGTTGCCCTCAGAGGTTATTGCACTGCCACAACTAATTTAGAGGGTCACCAGAGGATTATTGTCACTGATTTGATGGAAAATGGGAGTCTTTGTGATCATTTATTTGGTTCTGCCAAGAAGAAACTCAGTTGGTCAATTCGTCAAAAGATTGCTTTCGGGACCGCTAGGGGGTTGGCTTATTTGCACTATGGAGCTCAACCTTCCATCATCCATAGGGATATTAAATCTAGTAACATACTTCTGGACCACAATTTTGAAGCCAAGGTTGCGGATTTTGGATTAGCAAAGTTTAATCCTGAGGGAATGACTCATATGAGCACTAGAGTGGCTGGAACTAAGGGCTATGTTGCTCCTGAGTATGCCTTGTATGGACAGTTGACAGAGAGAAGTGATGTTTTCAGTTTTGGTGTTGTGCTTCTTGAGCTCTTAAGTGGGAAAAAGGCTCTTCATGTGGACAATGATGGCCAACCCTCTGCACTCACTGACTTTGCTTGGTCATTGGTTAGGAATGGTAAAGCTTTGGATGTTATTGAAGATGGTATGCCAGAACTTGGTCCAATTGAAGTTCTTGAGAAGTATGTGTTGGTTGCTGTACTATGTTGTCATCCACAATTATATGCTAGGCCAACAATGGATCAGGTTGTTAAAATGCTGGAGACAGAAGAATTGGAACAGCCAATCTCTTCTATTGCTGGGAGGATTGATGTTGATGAGAAATCAGTCAGTAGTAACTAG 1731 0.4437 MPLFVFLATIFLTLPTLSLSVTSCLLNTTLLRSRPSSSVDSATRCRYILQTIRVLQSDYLHRTGFFFPPSSSSFSCWNTLQSSINQYDIRSSCNLPSSSISLSCNNITTKSQFENSLPNSALKPVWSTCNQSLKSSLACSQCNKTLSKLDSFLTEPSTGELVDCKAIASIYAASFSDPQDSGTANCLFNFGFSSSVSSGKRRNIPVVVFSVLAFFLLVFGALWAYFRFKQKQKKKDIGKIEMGLGSGLDSGFDSLNQSTTLIRFTFDEIKKASRNFAGDNIIGKGGYGNVYKGVLFDGTRVALKRFKNCSVAGDASFTHEVEVIASVRHVNLVALRGYCTATTNLEGHQRIIVTDLMENGSLCDHLFGSAKKKLSWSIRQKIAFGTARGLAYLHYGAQPSIIHRDIKSSNILLDHNFEAKVADFGLAKFNPEGMTHMSTRVAGTKGYVAPEYALYGQLTERSDVFSFGVVLLELLSGKKALHVDNDGQPSALTDFAWSLVRNGKALDVIEDGMPELGPIEVLEKYVLVAVLCCHPQLYARPTMDQVVKMLETEELEQPISSIAGRIDVDEKSVSSN* 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1265 576 Pfam Protein kinase domain 280 547 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso19g1265 576 Pfam SPARK 22 154 IPR043891 -
Gso19g1265 576 CDD STKc_IRAK 282 551 - -
Gso19g1265 576 Gene3D Phosphorylase Kinase; domain 1 250 355 - -
Gso19g1265 576 SUPERFAMILY Protein kinase-like (PK-like) 253 551 IPR011009 -
Gso19g1265 576 ProSitePatterns Protein kinases ATP-binding region signature. 282 304 IPR017441 GO:0005524
Gso19g1265 576 ProSiteProfiles Protein kinase domain profile. 276 555 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso19g1265 576 ProSitePatterns Serine/Threonine protein kinases active-site signature. 401 413 IPR008271 GO:0004672|GO:0006468
Gso19g1265 576 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RKF3-RELATED 17 574 - -
Gso19g1265 576 SMART serkin_6 276 550 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso19g1265 576 Gene3D Transferase(Phosphotransferase) domain 1 357 566 - -
Gso19g1265 576 PANTHER OS01G0253100 PROTEIN 17 574 IPR045271 GO:0004714|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1265 Gso-Chr19 41197409 41199588 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1265 7 570 Receptor kinase-like Gene Family AT2G48010 57.093 0.0 670
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Gso19g1265 Pkinase 9.1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1265 - - gmx:100819980 1043.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1265 19 41197409 41199588 Gso3g1263 3 38318133 38323781 GST
Gso19g1265 19 41197409 41199588 Gso2g1248 2 15516701 15519112 PCT
Gso19g1265 19 41197409 41199588 Gso10g0205 10 2124189 2126974 PCT
Gso2g1248 2 15516701 15519112 Gso19g1265 19 41197409 41199588 PCT
Gso10g0205 10 2124189 2126974 Gso19g1265 19 41197409 41199588 PCT