Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1264 ATGTCCTTTCCCTTCTATTTCTACATCTTTTCTGTTCTTTTCCTTACCTTGGATCTCCCACCTCCTTCCCTGGCCGCAAACCACACCGTCCCATGCCCCCTCCACGTCGACGTCCTCCGCGAGGTTGGCGGCGGGCGGCGGCCCAAGTTCGACTCCGGCACGCAGTGCCATTACATCCTCCAAGCCCTCCACCTCCTCCAGGCCGACTACCTCCGGCGCAGCAGCCTCTTCGTTCCGCCGTTGAACTCCTCGGAGTCGTGCTGGAAGACCTTCCAATCCTTCATCAACGAGTTCGACCCCAGCATCACCGACATCCGCGCCTCCTGCGGCTTCAGAACCGAGTGGATCTCCCAGGGCTGCATGAACTTCACCACCAAACAAGAATTCGAAGAAATTGTTCCCCCCAACGCAATCCAACCCGTGGTAGCGGACTGCAACCAGCCCCTCGATAACAACGCCCCCTGCGCCCTCTGCATCACCAAACTCTCCAGCATGTTATCCTACTTAACCGGAACAACCGTAGGCAACGTCACCGATTGCAGAGCCTATACTCAAATCTACGCCGCTTCTCTTTCTGATCAATACGGAGCCTCTGATCCTGGAACAGCTAAGTGCCTCTTCGGTCTCGATTTTTCCTCCTCCGGCTCCGGTGGTAAGCGACGAAAAATCCTTATTGCGGTCGTTTCCGTTTTCTGTGTGTTGGCTTTGGCTGTGTTTGCTGGGCTTTGGGCTTACTTGAGATTCAAGAAGAGGAAGGAGGTTGCTGGAACAACTGAGCTGGGTTTGGGTTCTGGGTTGGATTCAATGAACCAGAGCACCACTTTGATTAGGTTCACTTTTGATGACATTAAAAAGGCTACCAGGAACTTCTCCAGGGATAACATAATCGGAAGTGGTGGTTACGGGAATGTTTACAAAGGGATGTTATTGGATGGTAGCCAAGTTGCTTTTAAAAGGTTTAAGAATTGTTCTGTTGCTGGGGATGCTAGCTTCACTCATGAAGTTGAGGTTATTGCGAGTGTGAGGCATGTGAATCTTGTTACCTTGAGAGGTTATTGTACTGCTACCACCAATTTGGAAGGCCACCAGAGGATTATTGTCACTGATTTGATGGAAAACGGGAGTCTTTATGATCATTTATTCGGTTCTGCTAAGAAGAATCTCAGTTGGCCAATTCGTCAAAAGATTGCTCTGGGGACCGCTAGGGGGTTGGCTTATTTGCACTACGGAGCTCAACCTTCCATAATCCATAGGGATATTAAGGCTAGTAACATTCTTCTGGACCACCATTTTGAAGCCAAGGTTGCGGATTTCGGGTTGGCCAAGTTTAACCCCGAGGGAATGACTCATATGAGTACTAGAGTGGCTGGGACTATGGGGTATGTTGCTCCTGAGTATGCCTTGTATGGACAATTGACAGATAGAAGTGATGTGTTCAGCTTTGGGGTTGTGCTTCTTGAGCTCTTGAGTGGGAGAAAGGCCCTTCAGACGGACAATGATGGCCAACCCGCTGCACTCACTGACTTTGCTTGGTCGTTAGTTAGGAATGGTAGTGCTTTGGATGTTGTTGAAGATGGTGTTCCAGAACCTGGTCCACCAGAAGTTCTTGAGAAGTATGTGTTGGTTGCTGTGCTGTGTTCTCATCCACAGCTATATGCTAGGCCTACAATGGATCAGGTTGTTAAAATGCTTGAGACAGATGAATCTGTGCCCTCATTGATGGAAAGGCCAATTCCTTTTATTGCTGGGAGGCTTGATATTCAGAAATCTGCGCTGAGTAACTCGGGTCACCTATGCAGTCCAACTGGTTATCAAGCATATACATTACAAGCTCGACGAAAATCTAATTCTAAGGAGGAAGAAGAAGAAGAAGAAGAAGGAAGTTCGGTGGCTGAGACTGTTACAACAGATTGA 1914 0.489 MSFPFYFYIFSVLFLTLDLPPPSLAANHTVPCPLHVDVLREVGGGRRPKFDSGTQCHYILQALHLLQADYLRRSSLFVPPLNSSESCWKTFQSFINEFDPSITDIRASCGFRTEWISQGCMNFTTKQEFEEIVPPNAIQPVVADCNQPLDNNAPCALCITKLSSMLSYLTGTTVGNVTDCRAYTQIYAASLSDQYGASDPGTAKCLFGLDFSSSGSGGKRRKILIAVVSVFCVLALAVFAGLWAYLRFKKRKEVAGTTELGLGSGLDSMNQSTTLIRFTFDDIKKATRNFSRDNIIGSGGYGNVYKGMLLDGSQVAFKRFKNCSVAGDASFTHEVEVIASVRHVNLVTLRGYCTATTNLEGHQRIIVTDLMENGSLYDHLFGSAKKNLSWPIRQKIALGTARGLAYLHYGAQPSIIHRDIKASNILLDHHFEAKVADFGLAKFNPEGMTHMSTRVAGTMGYVAPEYALYGQLTDRSDVFSFGVVLLELLSGRKALQTDNDGQPAALTDFAWSLVRNGSALDVVEDGVPEPGPPEVLEKYVLVAVLCSHPQLYARPTMDQVVKMLETDESVPSLMERPIPFIAGRLDIQKSALSNSGHLCSPTGYQAYTLQARRKSNSKEEEEEEEEGSSVAETVTTD* 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1264 637 Coils Coil 604 624 - -
Gso19g1264 637 Pfam Protein kinase domain 291 502 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso19g1264 637 ProSiteProfiles Protein kinase domain profile. 290 581 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso19g1264 637 Gene3D Phosphorylase Kinase; domain 1 263 369 - -
Gso19g1264 637 Gene3D Transferase(Phosphotransferase) domain 1 371 574 - -
Gso19g1264 637 Pfam SPARK 30 180 IPR043891 -
Gso19g1264 637 SUPERFAMILY Protein kinase-like (PK-like) 272 577 IPR011009 -
Gso19g1264 637 SMART serkin_6 290 581 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso19g1264 637 PANTHER OS01G0253100 PROTEIN 27 617 IPR045271 GO:0004714|GO:0006468
Gso19g1264 637 PANTHER RECEPTOR-LIKE KINASE IN IN FLOWERS PROTEIN 27 617 - -
Gso19g1264 637 MobiDBLite consensus disorder prediction 610 637 - -
Gso19g1264 637 ProSitePatterns Protein kinases ATP-binding region signature. 296 318 IPR017441 GO:0005524
Gso19g1264 637 CDD STKc_IRAK 296 565 - -
Gso19g1264 637 ProSitePatterns Serine/Threonine protein kinases active-site signature. 415 427 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1264 Gso-Chr19 41190386 41192995 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1264 23 609 Receptor kinase-like Gene Family AT2G48010 61.448 0.0 741
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Gso19g1264 Pkinase 4.1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1264 - - gmx:100819453 1227.62