Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1263 ATGAAGGACGAGGTGGATTCCCCTGTTGGTGTTCTTGAGGACTATTTCAAGAGCTCGGAATCAGAAACTAGTTCTTCCAAAGAACCCAGTACTATTGTGGATTCTGATAAGTCAAAACCCGGTTCTAGGTGGCATGCGTTTCTTCAATTGTTGAGGGACACATCGAAGAAGCCAATAGCCACATTGCATCCTCTTAGTGTCCTCAAGCTTTCGAGAAGAATGAGCAGTAGCATGAGGGAGACTATAATAGATGCAGATTCGTCCTTGCATAGACCACCCTGGAAGATCTTTACTCACCATGAGATACAAATTGCAACCAATTGCTTCACCCAAGAAAATTTTATTGGAAAGGGTGGTTATGCTGAGGTTTACAAAGGCTGTTTGCCAAATGGTCAGCTGGTAGCGATTAAACGGCTGACACATGGAACAGAAAATGAAACTATAGGGGACTTCTTATCAGAACTTGGCATAATGGCTCATGTAAACCACCCCAATACTGCTAAGTTAGTTGGCTATGGGGTGGAGGGAGGAATGCATTTAGTGCTTGAGTTGTCTGAAAAAGGGTGCTTAGCTTCAGTGCTTAATGGTTTCAAGGAGAAACTACCATGGTCTATAAGGCAGAAAATAGCATTAGGAACAGCTAAGGGTATAATGTATCTTCATGAAGGTTGTCAAAGAAGAATTATCCATAGAGATATAACAGCAGCAAATATCTTGCTTACCGAGGACTTTGAGCCGCAGATTTGTGATTTCGGGCTAGCAAAATGGCTACCAGAGAATTGGACCCATCACACTGTTTCAAAAATTGAAGGGACTTTTGGTTATCTTGCTCCTGAATACTTGCTTCATGGGATAGTGGATGAGAAAACAGATGTATTTGCCTTTGGTGTAGTGCTATTAGAATTAGTCACAGGGAGACGAGCACTTGATCATTCACAACAAAGCCTTGTTTTGTGGGCAAAACCTTTGCTGAAAAAGAATTCTATTAGGGAGCTGATTGATCCTTCATTAGCCGATGATTTTGACTGTCGTCAGATTAAAATTATGCTCTGGGCGGCTTCTTTATGCATTCAACAATCTTCTATTCATCGTCCCTTTATGAAACAGGTTGTACAACTTTTGAATGGTAACCTTAGCTGCTTTAAGTTCACGAAGAAATCTCAACATCCATTCTTCCGAAAAGTCTTTCAAGAAGAGCTTCTTGACGATTCTGATTAA 1218 0.4105 MKDEVDSPVGVLEDYFKSSESETSSSKEPSTIVDSDKSKPGSRWHAFLQLLRDTSKKPIATLHPLSVLKLSRRMSSSMRETIIDADSSLHRPPWKIFTHHEIQIATNCFTQENFIGKGGYAEVYKGCLPNGQLVAIKRLTHGTENETIGDFLSELGIMAHVNHPNTAKLVGYGVEGGMHLVLELSEKGCLASVLNGFKEKLPWSIRQKIALGTAKGIMYLHEGCQRRIIHRDITAANILLTEDFEPQICDFGLAKWLPENWTHHTVSKIEGTFGYLAPEYLLHGIVDEKTDVFAFGVVLLELVTGRRALDHSQQSLVLWAKPLLKKNSIRELIDPSLADDFDCRQIKIMLWAASLCIQQSSIHRPFMKQVVQLLNGNLSCFKFTKKSQHPFFRKVFQEELLDDSD* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1263 405 ProSiteProfiles Protein kinase domain profile. 109 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso19g1263 405 MobiDBLite consensus disorder prediction 1 40 - -
Gso19g1263 405 MobiDBLite consensus disorder prediction 17 31 - -
Gso19g1263 405 ProSitePatterns Tyrosine protein kinases specific active-site signature. 228 240 IPR008266 GO:0004672|GO:0006468
Gso19g1263 405 SUPERFAMILY Protein kinase-like (PK-like) 89 374 IPR011009 -
Gso19g1263 405 ProSitePatterns Protein kinases ATP-binding region signature. 115 137 IPR017441 GO:0005524
Gso19g1263 405 Gene3D Transferase(Phosphotransferase) domain 1 186 392 - -
Gso19g1263 405 Pfam Protein tyrosine and serine/threonine kinase 112 372 IPR001245 GO:0004672|GO:0006468
Gso19g1263 405 Gene3D Phosphorylase Kinase; domain 1 80 183 - -
Gso19g1263 405 PANTHER OS08G0249100 PROTEIN 1 403 - -
Gso19g1263 405 PANTHER PROTEIN KINASE FAMILY PROTEIN 1 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1263 Gso-Chr19 41184827 41188306 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1263 97 376 Receptor kinase-like Gene Family AT1G53420 41.667 5.18e-67 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Gso19g1263 PK_Tyr_Ser-Thr 3.7e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1263 - - gmx:100818913 799.275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1263 19 41184827 41188306 Gso3g1262 3 38309949 38313218 GST
Gso19g1263 19 41184827 41188306 Gso2g1249 2 15528942 15532897 PCT
Gso19g1263 19 41184827 41188306 Gso10g0204 10 2113654 2117408 PCT
Gso2g1249 2 15528942 15532897 Gso19g1263 19 41184827 41188306 PCT
Gso10g0204 10 2113654 2117408 Gso19g1263 19 41184827 41188306 PCT